Collimonas pratensis strain Ter91

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas pratensis strain Ter91 is characterized by having a single replicon, which simplifies its genomic structure and may influence its adaptability in various environments. The strain is cataloged under the accession number NZ_CP013234.1, which allows for its identification and provides access to its genomic data. This strain is part of the Collimonas genus, known for its distinct ecological role as a saprophytic bacterium, particularly in soil environments. Collimonas species are recognized for their ability to degrade organic matter and form symbiotic relationships with fungi, contributing to nutrient cycling and soil health. The single replicon observed in strain Ter91 may enhance its efficiency in these ecological interactions, as it could streamline the regulation of genes involved in metabolic processes and environmental responses. In summary, the genomic structure of Collimonas pratensis strain Ter91, with its single replicon, reflects its specialized adaptations to its ecological niche. By facilitating efficient metabolic and ecological functions, this strain likely plays a critical role in soil ecosystems, supporting both organic matter decomposition and interactions with other soil microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas pratensis
Strainstrain Ter91

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas pratensis strain Ter91


Gene Summary

Adenine Count

1181550 bp

Thymine Count

1182785 bp

Guanine Count

1682193 bp

Cytosine Count

1683497 bp

Genome Length

5730025 bp

Protein-coding Genes

5076 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinCPter91_RS24770Not AvailableNegative5575887 - 557786971983.0
type vi secretion system vgr family proteinCPter91_RS24775Not AvailableNegative5577878 - 558059599367.2
nipsnap family proteinCPter91_RS24780Not AvailableNegative5580822 - 558112711722.0
dmt family transporterCPter91_RS24785Not AvailableNegative5581162 - 558206132088.1
mgdg synthase family glycosyltransferaseCPter91_RS24790Not AvailablePositive5582515 - 558361840449.4
hypothetical proteinCPter91_RS24795Not AvailablePositive5583615 - 558412119762.1
gntr family transcriptional regulatorCPter91_RS24800Not AvailablePositive5584233 - 558510232521.6
duf6622 family proteinCPter91_RS24805Not AvailablePositive5585250 - 558577719538.7
ybdd/yjix family proteinCPter91_RS24810Not AvailableNegative5585866 - 55860667625.18
carbon starvation csta family proteinCPter91_RS24815Not AvailableNegative5586089 - 558816173912.3

Displaying genes 5071 – 5080 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.