Collimonas pratensis strain Ter91

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas pratensis strain Ter91 is characterized by having a single replicon, which simplifies its genomic structure and may influence its adaptability in various environments. The strain is cataloged under the accession number NZ_CP013234.1, which allows for its identification and provides access to its genomic data. This strain is part of the Collimonas genus, known for its distinct ecological role as a saprophytic bacterium, particularly in soil environments. Collimonas species are recognized for their ability to degrade organic matter and form symbiotic relationships with fungi, contributing to nutrient cycling and soil health. The single replicon observed in strain Ter91 may enhance its efficiency in these ecological interactions, as it could streamline the regulation of genes involved in metabolic processes and environmental responses. In summary, the genomic structure of Collimonas pratensis strain Ter91, with its single replicon, reflects its specialized adaptations to its ecological niche. By facilitating efficient metabolic and ecological functions, this strain likely plays a critical role in soil ecosystems, supporting both organic matter decomposition and interactions with other soil microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas pratensis
Strainstrain Ter91

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas pratensis strain Ter91 chromosome, complete genome.

Gene Summary

Adenine Count

1181550 bp

Thymine Count

1182785 bp

Guanine Count

1682193 bp

Cytosine Count

1683497 bp

Genome Length

5730025 bp

Protein-coding Genes

5076 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinyldiaminopimelate transaminaseCPter91_RS17280Not AvailablePositive3869237 - 387043943873.4
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseCPter91_RS17285Not AvailablePositive3870580 - 387140729754.7
pilt/pilu family type 4a pilus atpaseCPter91_RS17290Not AvailablePositive3871518 - 387266342260.9
arsc family reductaseCPter91_RS17295Not AvailablePositive3872700 - 387305313319.0
succinyl-diaminopimelate desuccinylaseCPter91_RS17300Not AvailablePositive3873111 - 387425640997.8
methyltransferase regulatory domain-containing proteinCPter91_RS17305Not AvailablePositive3874289 - 387588459029.5
50s ribosomal protein l3 n(5)-glutamine methyltransferaseCPter91_RS17310Not AvailablePositive3876077 - 387696132522.9
atp-binding cassette domain-containing proteinCPter91_RS17315Not AvailablePositive3877091 - 387909474156.8
rossmann-like and duf2520 domain-containing proteinCPter91_RS17320Not AvailablePositive3879052 - 387996331139.1
cystine abc transporter substrate-binding proteinCPter91_RS17325Not AvailablePositive3880406 - 388120928689.6

Displaying genes 3561 – 3570 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.