Collimonas pratensis strain Ter91

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas pratensis strain Ter91 is characterized by having a single replicon, which simplifies its genomic structure and may influence its adaptability in various environments. The strain is cataloged under the accession number NZ_CP013234.1, which allows for its identification and provides access to its genomic data. This strain is part of the Collimonas genus, known for its distinct ecological role as a saprophytic bacterium, particularly in soil environments. Collimonas species are recognized for their ability to degrade organic matter and form symbiotic relationships with fungi, contributing to nutrient cycling and soil health. The single replicon observed in strain Ter91 may enhance its efficiency in these ecological interactions, as it could streamline the regulation of genes involved in metabolic processes and environmental responses. In summary, the genomic structure of Collimonas pratensis strain Ter91, with its single replicon, reflects its specialized adaptations to its ecological niche. By facilitating efficient metabolic and ecological functions, this strain likely plays a critical role in soil ecosystems, supporting both organic matter decomposition and interactions with other soil microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas pratensis
Strainstrain Ter91

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas pratensis strain Ter91


Gene Summary

Adenine Count

1181550 bp

Thymine Count

1182785 bp

Guanine Count

1682193 bp

Cytosine Count

1683497 bp

Genome Length

5730025 bp

Protein-coding Genes

5076 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulatorCPter91_RS00620Not AvailableNegative130946 - 13195939052.7
sensor histidine kinase kdpdCPter91_RS00625Not AvailableNegative132037 - 13335649650.2
alpha-hydroxyketone-type quorum-sensing autoinducer synthaseCPter91_RS00630Not AvailablePositive133524 - 13479245802.8
helix-turn-helix domain-containing proteinCPter91_RS00635Not AvailableNegative134847 - 13528416103.5
nad(p)-dependent oxidoreductaseCPter91_RS00640Not AvailablePositive135380 - 13599121561.9
duf1697 domain-containing proteinCPter91_RS00645Not AvailableNegative136004 - 13656720072.0
anthranilate 1,2-dioxygenase ferredoxin subunit andabCPter91_RS00650Not AvailableNegative136614 - 13767538303.6
anthranilate 1,2-dioxygenase small subunit andadCPter91_RS00655Not AvailableNegative137683 - 13815618192.7
anthranilate 1,2-dioxygenase large subunit andacCPter91_RS00660Not AvailableNegative138169 - 13943447928.9
muconate/chloromuconate family cycloisomeraseCPter91_RS00665Not AvailablePositive139722 - 14087041034.2

Displaying genes 221 – 230 of 5212 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.