Lysobacter enzymogenes strain C3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter enzymogenes strain C3 is a Gram-negative bacterium characterized by its rod shape. This strain is primarily found in soil habitats, where it plays a role in the microbial ecosystem. It possesses a single replicon, which is indicative of its genomic structure and potential for metabolic functions. The strain is cataloged under the accession number NZ_CP013140.1, providing a reference for genetic and genomic studies. The presence of Lysobacter enzymogenes strain C3 in soil suggests its involvement in nutrient cycling and interactions with other soil microorganisms. Its Gram-negative nature may also imply certain biochemical properties, such as the potential production of extracellular enzymes that could contribute to its ecological functions, including the degradation of organic matter. Understanding the specific roles of this strain in soil ecosystems can provide insights into its applications in biocontrol or bioremediation, given its enzymatic capabilities. Furthermore, the study of its genomic features may yield important information about its adaptability and survival strategies in diverse soil environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter enzymogenes
Strainstrain C3

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter enzymogenes strain C3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter enzymogenes strain C3 chromosome.

Gene Summary

Adenine Count

923645 bp

Thymine Count

926842 bp

Guanine Count

2150619 bp

Cytosine Count

2148063 bp

Genome Length

6157384 bp

Protein-coding Genes

5024 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease p protein componentGLE_RS23650Q2NX51Positive5944419 - 594485315545.8
membrane protein insertase yidcGLE_RS23655B4SPG0Positive5944869 - 594659963129.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeGLE_RS23660Q4UNL0Positive5946846 - 594821647638.3
alkene reductaseGLE_RS23665P77258Negative5948706 - 594980639228.4
2,5-didehydrogluconate reductase dkgbGLE_RS23670Q8ZRM7Negative5950028 - 595083129041.8
mfs transporterGLE_RS23675O34367Negative5950865 - 595206740696.7
zinc ribbon domain-containing proteinGLE_RS23680Not AvailableNegative5952473 - 595381948415.9
spfh and helix-turn-helix domain-containing proteinGLE_RS23685O34789Negative5953819 - 595487737872.3
energy transducer tonbGLE_RS23690Not AvailablePositive5955384 - 595642436540.8
abc transporter permeaseGLE_RS23695Not AvailableNegative5956624 - 595781142775.1

Displaying genes 4901 – 4910 of 5094 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

242 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 242 metabolites

Health Effects

No health effects information available for this bacterium.