Clostridium perfringens strain JP838

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium perfringens strain JP838 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain thrives optimally at 37.0°C, which is indicative of its adaptation to host-associated environments, where it likely engages in anaerobic metabolism as a chemoorganotroph. As an anaerobic organism, C. perfringens strain JP838 relies on the absence of oxygen for its energy metabolism, a trait that aligns with its ecological niche within the gastrointestinal tracts of various hosts. The ability to form different cellular arrangements, including pairs and chains, may facilitate its survival and colonization in such anaerobic habitats. Given its habitat and metabolic characteristics, C. perfringens strain JP838 may play a significant role in the complex microbial communities found in host intestines, contributing to various biochemical processes, including fermentation and nutrient cycling. This underscores the potential importance of this strain in maintaining gut homeostasis and its interactions with the host's immune system and other microbial inhabitants. These traits highlight the intricate balance of microbial life within host-associated ecosystems and the need for further research to elucidate the specific roles of such strains in health and disease contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium perfringens
Strainstrain JP838

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium perfringens strain JP838
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles - Chains
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityAnimal; Human

Genome Summary

Clostridium perfringens strain JP838


Gene Summary

Adenine Count

4328 bp

Thymine Count

6274 bp

Guanine Count

1501 bp

Cytosine Count

2554 bp

Genome Length

14657 bp

Protein-coding Genes

14 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid mobilization proteinJFP838_RS16020Not Available-988 - 130512629.5
copg family transcriptional regulatorJFP838_RS16025Not Available-1563 - 186811995.9
hypothetical proteinJFP838_RS16030Not Available-2169 - 341649602.8
hypothetical proteinJFP838_RS16035Not Available-3506 - 402120452.8
hlyd family efflux transporter periplasmic adaptor subunitJFP838_RS16040Not Available-4040 - 556958440.3
peptidase domain-containing abc transporterJFP838_RS16045Not Available-5559 - 776383257.3
hypothetical proteinJFP838_RS16050Not Available+7939 - 81276450.9
hypothetical proteinJFP838_RS19635Not Available+8169 - 83455911.19
helix-turn-helix domain-containing proteinJFP838_RS16060Not Available-8656 - 894611036.3
hypothetical proteinJFP838_RS16065Not Available+9229 - 94296344.72

Displaying genes 1 – 10 of 641 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001481plastoquinol-9C53H82O2Chemical structure of plastoquinol-9Not available
Average751.237Da
Monoisotopic750.6314819Da
BASm00056516-geranylgeranyl-2-methylbenzene-1,4-diolC27H40O2Chemical structure of 6-geranylgeranyl-2-methylbenzene-1,4-diolNot available
Average396.615Da
Monoisotopic396.302830528Da
BASm00056526-geranylgeranyl-2,3-dimethylbenzene-1,4-diolC28H42O2Chemical structure of 6-geranylgeranyl-2,3-dimethylbenzene-1,4-diolNot available
Average410.642Da
Monoisotopic410.3184806Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm00141964-Hydroxyphenylpyruvic acidC9H8O4Chemical structure of 4-Hydroxyphenylpyruvic acidNULL
Average180.1574Da
Monoisotopic180.042258744Da
BASm00200002-trans,6-trans,10-trans-Geranylgeranyl diphosphateC20H36O7P2Chemical structure of 2-trans,6-trans,10-trans-Geranylgeranyl diphosphate6699-20-3
Average450.4432Da
Monoisotopic450.19362653Da

Displaying 1–6 of 6 metabolites