Lactobacillus gallinarum strain HFD4

Gram-positiveRodfacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Lactobacillus

Description

Lactobacillus gallinarum strain HFD4 is a Gram-positive, rod-shaped bacterium that inhabits the gastrointestinal environment, particularly the ileum. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which is beneficial for survival in varying conditions within the gut. Notably, L. gallinarum HFD4 possesses true flagella, which may enhance its motility in the gastrointestinal tract, potentially aiding in colonization and interaction with host tissues. It is associated with several hosts, including Homo sapiens (humans), Gallus gallus (domestic chickens), and Aves (birds), highlighting its adaptability to different species within the animal kingdom. The strain has six replicons, which may suggest a complex genomic organization that could facilitate its metabolic versatility and resilience in diverse gut environments. The multiple accessions (NZ_CP012890.1; NZ_CP012891.1; NZ_CP012892.1; NZ_CP012893.1; NZ_CP012895.1; NZ_CP012896.1) associated with L. gallinarum HFD4 provide a rich resource for further genetic and functional studies. In ecological terms, the presence of L. gallinarum in the gastrointestinal tracts of various hosts underscores its potential role in gut health and microbiome diversity. Its ability to thrive in both human and avian systems suggests a shared ecological function that may contribute to the overall balance of gut microbiota, which is crucial for digestion and immune responses.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactobacillus
SpeciesLactobacillus gallinarum
Strainstrain HFD4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Lactobacillus gallinarum strain HFD4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal environment; ileum
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

2295 bp

Thymine Count

2301 bp

Guanine Count

1205 bp

Cytosine Count

1209 bp

Genome Length

7010 bp

Protein-coding Genes

5 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding protein/permeaseAO203_RS12005Not AvailablePositive60 - 132648728.6
abc transporter atp-binding protein/permeaseAO203_RS12010Not AvailableNegative1614 - 320155083.9
abc transporter atp-binding protein/permeaseAO203_RS12785Not AvailableNegative3198 - 366716889.5
abc transporter atp-binding protein/permeaseAO203_RS12015Not AvailablePositive3678 - 421019047.8
abc transporter atp-binding protein/permeaseAO203_RS12020Not AvailablePositive4207 - 577856810.1
is3 family transposaseAO203_RS12045Not AvailableNegative268 - 108331687.0
transposaseAO203_RS12050Not AvailableNegative1110 - 137010000.8
AttlNot AvailableNot AvailablePositive1863482 - 1863496Not Available
EndolysinAO203_RS09450Not AvailableNegative1867193 - 186831440579.4
Hypothetical proteinAO203_RS09455Not AvailableNegative1868377 - 186879314672.4

Displaying genes 1 – 10 of 2477 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

64 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da

Displaying 1–10 of 64 metabolites

Health Effects

No health effects information available for this bacterium.