Sorangium cellulosum strain So ce26

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum strain So ce26 is a Gram-negative bacterium primarily found in the rhizosphere, the zone of soil surrounding plant roots. This habitat suggests that the organism may play a role in plant-microbe interactions, potentially influencing plant growth and health through various ecological mechanisms. The strain is characterized by having a single replicon, indicating a streamlined genetic organization that may facilitate efficient replication and adaptation within its niche. This feature is particularly relevant in understanding the genomic stability and evolutionary dynamics of the organism. The accession number for Sorangium cellulosum strain So ce26 is NZ_CP012673.1, which provides a reference for researchers seeking to access genomic data for further study. This genetic information can be crucial for exploring the metabolic capabilities and ecological roles of the strain in greater detail. Ecologically, the presence of Sorangium cellulosum strain So ce26 in the rhizosphere underscores the significance of microbial diversity in soil environments, particularly in relation to plant health and nutrient cycling. Its Gram-negative classification may also indicate specific physiological traits that enable it to interact with plants and other soil microbes, contributing to the complex dynamics of the rhizosphere ecosystem. Overall, the study of this strain can offer insights into microbial functions that support plant growth and soil health.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
Strainstrain So ce26

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So ce26 chromosome, complete genome.

Gene Summary

Adenine Count

2063583 bp

Thymine Count

2052013 bp

Guanine Count

5221052 bp

Cytosine Count

5220941 bp

Genome Length

14557589 bp

Protein-coding Genes

10457 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseSOCE26_RS16260Not AvailableNegative4318023 - 431874824535.4
hypothetical proteinSOCE26_RS16265Not AvailableNegative4318820 - 431981834068.1
serine/threonine-protein kinaseSOCE26_RS16270Not AvailableNegative4319884 - 432165960311.5
formylglycine-generating enzyme family proteinSOCE26_RS16275Not AvailableNegative4321796 - 432291139373.4
response regulatorSOCE26_RS16280Not AvailablePositive4323648 - 432543864188.8
stas domain-containing proteinSOCE26_RS16285Not AvailablePositive4325556 - 432697452268.9
sir2 family nad-dependent protein deacylaseSOCE26_RS16290Not AvailablePositive4327309 - 432815131953.2
non-canonical purine ntp pyrophosphataseSOCE26_RS16295Not AvailablePositive4328162 - 432870420134.5
vancomycin high temperature exclusion proteinSOCE26_RS16300Not AvailablePositive4328834 - 432955325606.1
aldo/keto reductaseSOCE26_RS16305Not AvailablePositive4329722 - 433075938162.7

Displaying genes 3191 – 3200 of 10530 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.