Sorangium cellulosum strain So ceGT47

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum strain So ceGT47 is a Gram-negative bacterium primarily found in the rhizosphere, the region of soil around plant roots that is rich in microbial activity. This bacterium features a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability in its ecological niche. The strain is cataloged under the accession number NZ_CP012670.1, which provides a reference for researchers seeking to explore its genomic characteristics further. The rhizosphere habitat suggests that S. cellulosum strain So ceGT47 may have symbiotic or mutualistic relationships with plants, potentially aiding in nutrient cycling or plant health. Understanding the ecological role of Sorangium cellulosum strain So ceGT47 in the rhizosphere can provide insights into its function in soil ecosystems, particularly regarding its interactions with plant roots and other soil microorganisms. This knowledge may be crucial for applications in agriculture, where enhancing beneficial microbial communities can lead to improved plant growth and soil health.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
Strainstrain So ceGT47

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So ceGT47 chromosome, complete genome.

Gene Summary

Adenine Count

1544488 bp

Thymine Count

1543654 bp

Guanine Count

4087082 bp

Cytosine Count

4086257 bp

Genome Length

11261481 bp

Protein-coding Genes

8320 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m3 family metallopeptidaseSOCEGT47_RS20865Not AvailablePositive5527403 - 552954778647.5
tetratricopeptide repeat proteinSOCEGT47_RS20870Not AvailableNegative5529588 - 5532410100819.0
hypothetical proteinSOCEGT47_RS20875Not AvailablePositive5532556 - 553288510885.5
serine/threonine-protein kinaseSOCEGT47_RS20880Not AvailableNegative5532921 - 553425246479.5
fha domain-containing proteinSOCEGT47_RS20885Not AvailableNegative5534249 - 553547843025.7
type iv-a pilus assembly atpase pilbSOCEGT47_RS20890Not AvailablePositive5535581 - 553728162359.8
type iv pilus twitching motility protein piltSOCEGT47_RS20895Not AvailablePositive5537286 - 553842541924.2
transcriptional repressor lexaSOCEGT47_RS20900Not AvailablePositive5538610 - 553930225199.4
duf4398 domain-containing proteinSOCEGT47_RS20905Not AvailablePositive5539461 - 55397369625.98
ompa family proteinSOCEGT47_RS20910Not AvailablePositive5539802 - 554090539784.9

Displaying genes 4171 – 4180 of 8396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.