Piscirickettsia salmonis strain PM32597B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM32597B1 is a significant pathogen affecting salmonids, particularly in aquaculture environments. This strain is characterized by possessing five distinct replicons, which are crucial for its genetic and functional diversity. The genomic data for this strain can be accessed via multiple accession numbers: NZ_CP012508.1, NZ_CP012509.1, NZ_CP012511.1, NZ_CP012512.1, and NZ_CP012510.1. Each accession corresponds to different segments of the strain's genome, reflecting its complex genetic architecture. This genetic setup may contribute to the bacterium's adaptability and pathogenicity in aquatic environments. Understanding the genomic structure of P. salmonis PM32597B1 is vital for developing effective management strategies in aquaculture. The presence of multiple replicons may enhance the organism's ability to survive under various environmental stresses, which is particularly important in the context of fish farming where conditions can vary significantly. Given the economic importance of salmonid species and the impact of diseases caused by P. salmonis, further research into the specific functions of these replicons could provide insights into the bacterium's virulence and mechanisms of infection. This knowledge can ultimately lead to improved disease control measures, benefiting both the aquaculture industry and aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM32597B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3,

Gene Summary

Adenine Count

55262 bp

Thymine Count

55322 bp

Guanine Count

35685 bp

Cytosine Count

34766 bp

Genome Length

181035 bp

Protein-coding Genes

134 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf494 family proteinKU39_RS15380Not AvailablePositive3113994 - 311447318298.7
type i dna topoisomeraseKU39_RS15385Not AvailablePositive3114620 - 311694188911.7
sua5/ycio/yrdc/ywlc family proteinKU39_RS15390Not AvailablePositive3116943 - 311751220489.0
oxygen-dependent coproporphyrinogen oxidaseKU39_RS15395Not AvailablePositive3117517 - 311841634541.5
duf4823 domain-containing proteinKU39_RS15400Not AvailablePositive3118580 - 311915822357.7
is30 family transposaseKU39_RS15405Not AvailableNegative3119198 - 312017237573.6
hypothetical proteinKU39_RS15410Not AvailablePositive3120762 - 312113914258.4
helix-turn-helix domain-containing proteinKU39_RS22115Not AvailablePositive3121175 - 312145610590.9
is3 family transposaseKU39_RS22120Not AvailablePositive3121474 - 312181513373.8
is30 family transposaseKU39_RS15425Not AvailablePositive3121874 - 312284837573.6

Displaying genes 3701 – 3710 of 3764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.