Piscirickettsia salmonis strain PM32597B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM32597B1 is a significant pathogen affecting salmonids, particularly in aquaculture environments. This strain is characterized by possessing five distinct replicons, which are crucial for its genetic and functional diversity. The genomic data for this strain can be accessed via multiple accession numbers: NZ_CP012508.1, NZ_CP012509.1, NZ_CP012511.1, NZ_CP012512.1, and NZ_CP012510.1. Each accession corresponds to different segments of the strain's genome, reflecting its complex genetic architecture. This genetic setup may contribute to the bacterium's adaptability and pathogenicity in aquatic environments. Understanding the genomic structure of P. salmonis PM32597B1 is vital for developing effective management strategies in aquaculture. The presence of multiple replicons may enhance the organism's ability to survive under various environmental stresses, which is particularly important in the context of fish farming where conditions can vary significantly. Given the economic importance of salmonid species and the impact of diseases caused by P. salmonis, further research into the specific functions of these replicons could provide insights into the bacterium's virulence and mechanisms of infection. This knowledge can ultimately lead to improved disease control measures, benefiting both the aquaculture industry and aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM32597B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3,

Gene Summary

Adenine Count

55262 bp

Thymine Count

55322 bp

Guanine Count

35685 bp

Cytosine Count

34766 bp

Genome Length

181035 bp

Protein-coding Genes

134 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
icmt/trak family proteinKU39_RS12795Not AvailableNegative2618887 - 26191269303.72
atpase, t2ss/t4p/t4ss familyKU39_RS12800Not AvailableNegative2619147 - 262026841689.4
type iv secretory system conjugative dna transfer family proteinKU39_RS12805Not AvailableNegative2620246 - 262099228199.9
dotd/trah family lipoproteinKU39_RS12810Not AvailableNegative2620985 - 262148818827.3
hypothetical proteinKU39_RS12815Not AvailableNegative2621537 - 262195914551.0
hypothetical proteinKU39_RS12820Not AvailableNegative2621986 - 262302337116.0
hypothetical proteinKU39_RS12825Not AvailableNegative2623039 - 262401936632.5
trbi/virb10 family proteinKU39_RS12830Not AvailableNegative2624025 - 262521843435.7
doth/icmk family type iv secretion proteinKU39_RS12835Not AvailableNegative2625221 - 262606030242.5
hypothetical proteinKU39_RS12840Not AvailablePositive2626574 - 262699914794.2

Displaying genes 3161 – 3170 of 3764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.