Piscirickettsia salmonis strain PM32597B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM32597B1 is a significant pathogen affecting salmonids, particularly in aquaculture environments. This strain is characterized by possessing five distinct replicons, which are crucial for its genetic and functional diversity. The genomic data for this strain can be accessed via multiple accession numbers: NZ_CP012508.1, NZ_CP012509.1, NZ_CP012511.1, NZ_CP012512.1, and NZ_CP012510.1. Each accession corresponds to different segments of the strain's genome, reflecting its complex genetic architecture. This genetic setup may contribute to the bacterium's adaptability and pathogenicity in aquatic environments. Understanding the genomic structure of P. salmonis PM32597B1 is vital for developing effective management strategies in aquaculture. The presence of multiple replicons may enhance the organism's ability to survive under various environmental stresses, which is particularly important in the context of fish farming where conditions can vary significantly. Given the economic importance of salmonid species and the impact of diseases caused by P. salmonis, further research into the specific functions of these replicons could provide insights into the bacterium's virulence and mechanisms of infection. This knowledge can ultimately lead to improved disease control measures, benefiting both the aquaculture industry and aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM32597B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3,

Gene Summary

Adenine Count

55262 bp

Thymine Count

55322 bp

Guanine Count

35685 bp

Cytosine Count

34766 bp

Genome Length

181035 bp

Protein-coding Genes

134 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3540 domain-containing proteinKU39_RS12045Not AvailableNegative2464340 - 246503226372.6
pentapeptide repeat-containing proteinKU39_RS12050Not AvailableNegative2465010 - 246603838931.1
pentapeptide repeat-containing proteinKU39_RS12055Not AvailableNegative2466032 - 246723745353.2
duf2169 domain-containing proteinKU39_RS12060Not AvailableNegative2467264 - 246877558543.0
type vi secretion system lipoprotein tssjKU39_RS12065Not AvailablePositive2468985 - 246947318611.8
type vi secretion system baseplate subunit tsskKU39_RS12070Not AvailablePositive2469550 - 247085750459.4
type ivb secretion system protein icmh/dotuKU39_RS12075Not AvailablePositive2470862 - 247157227422.2
imcf-related family proteinKU39_RS12080Not AvailablePositive2471585 - 2474755121312.0
hypothetical proteinKU39_RS12085Not AvailableNegative2474822 - 247595843134.1
hypothetical proteinKU39_RS20970Not AvailablePositive2476506 - 24766766969.6

Displaying genes 3001 – 3010 of 3764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.