Piscirickettsia salmonis strain PM32597B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM32597B1 is a significant pathogen affecting salmonids, particularly in aquaculture environments. This strain is characterized by possessing five distinct replicons, which are crucial for its genetic and functional diversity. The genomic data for this strain can be accessed via multiple accession numbers: NZ_CP012508.1, NZ_CP012509.1, NZ_CP012511.1, NZ_CP012512.1, and NZ_CP012510.1. Each accession corresponds to different segments of the strain's genome, reflecting its complex genetic architecture. This genetic setup may contribute to the bacterium's adaptability and pathogenicity in aquatic environments. Understanding the genomic structure of P. salmonis PM32597B1 is vital for developing effective management strategies in aquaculture. The presence of multiple replicons may enhance the organism's ability to survive under various environmental stresses, which is particularly important in the context of fish farming where conditions can vary significantly. Given the economic importance of salmonid species and the impact of diseases caused by P. salmonis, further research into the specific functions of these replicons could provide insights into the bacterium's virulence and mechanisms of infection. This knowledge can ultimately lead to improved disease control measures, benefiting both the aquaculture industry and aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM32597B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3,

Gene Summary

Adenine Count

55262 bp

Thymine Count

55322 bp

Guanine Count

35685 bp

Cytosine Count

34766 bp

Genome Length

181035 bp

Protein-coding Genes

134 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spy/cpxp family protein refolding chaperoneKU39_RS10575Not AvailablePositive2178480 - 217897118244.5
hypothetical proteinKU39_RS10580Not AvailableNegative2179111 - 217960218011.4
rossmann-like and duf2520 domain-containing proteinKU39_RS10585Not AvailablePositive2179805 - 218069532057.6
nucleoside triphosphate pyrophosphataseKU39_RS10590Not AvailablePositive2181065 - 218166422263.8
signal peptide peptidase sppaKU39_RS10595Not AvailableNegative2181745 - 218268334462.8
fusc family proteinKU39_RS10600Not AvailableNegative2182735 - 218382940809.2
na+/h+ antiporter nhaaKU39_RS10605Not AvailablePositive2183954 - 218527647928.8
nad-glutamate dehydrogenaseKU39_RS10610Not AvailableNegative2185324 - 2190210185344.0
duf2835 family proteinKU39_RS10615Not AvailableNegative2190305 - 21905298657.55
prka family serine protein kinaseKU39_RS10620Not AvailablePositive2190718 - 219264073802.5

Displaying genes 2701 – 2710 of 3764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.