Piscirickettsia salmonis strain PM32597B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM32597B1 is a significant pathogen affecting salmonids, particularly in aquaculture environments. This strain is characterized by possessing five distinct replicons, which are crucial for its genetic and functional diversity. The genomic data for this strain can be accessed via multiple accession numbers: NZ_CP012508.1, NZ_CP012509.1, NZ_CP012511.1, NZ_CP012512.1, and NZ_CP012510.1. Each accession corresponds to different segments of the strain's genome, reflecting its complex genetic architecture. This genetic setup may contribute to the bacterium's adaptability and pathogenicity in aquatic environments. Understanding the genomic structure of P. salmonis PM32597B1 is vital for developing effective management strategies in aquaculture. The presence of multiple replicons may enhance the organism's ability to survive under various environmental stresses, which is particularly important in the context of fish farming where conditions can vary significantly. Given the economic importance of salmonid species and the impact of diseases caused by P. salmonis, further research into the specific functions of these replicons could provide insights into the bacterium's virulence and mechanisms of infection. This knowledge can ultimately lead to improved disease control measures, benefiting both the aquaculture industry and aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM32597B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-3,

Gene Summary

Adenine Count

55262 bp

Thymine Count

55322 bp

Guanine Count

35685 bp

Cytosine Count

34766 bp

Genome Length

181035 bp

Protein-coding Genes

134 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinKU39_RS21655Not AvailableNegative725427 - 72634133434.8
isopentenyl-diphosphate delta-isomeraseKU39_RS03645Not AvailableNegative727874 - 72841320574.3
diphosphomevalonate decarboxylaseKU39_RS03650Not AvailableNegative728410 - 72943838394.9
mevalonate kinaseKU39_RS03655Not AvailableNegative729428 - 73049238334.0
hydroxymethylglutaryl-coa synthaseKU39_RS17970Not AvailableNegative730480 - 73270882230.3
hydroxymethylglutaryl-coa reductaseKU39_RS03665Not AvailableNegative732695 - 73373537477.4
outer membrane protein assembly factor bamaKU39_RS03670Not AvailablePositive734071 - 73646487707.5
omph family outer membrane proteinKU39_RS03675Not AvailablePositive736545 - 73707819353.8
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseKU39_RS03680Not AvailablePositive737189 - 73823836321.8
3-hydroxyacyl-acp dehydratase fabzKU39_RS03685Not AvailablePositive738265 - 73870216217.1

Displaying genes 1281 – 1290 of 3764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.