Escherichia coli strain 06-00048

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 06-00048 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions found within many host organisms. As a facultative anaerobe, E. coli strain 06-00048 possesses the metabolic versatility to utilize oxygen when available, but it can also grow in its absence, allowing it to successfully colonize diverse host environments. The habitat of this strain is characterized as host-associated, indicating a potential symbiotic or opportunistic relationship with its host. Such associations are common among E. coli strains, which can inhabit the intestines of warm-blooded animals, including humans. The ability of E. coli strain 06-00048 to adapt to varying oxygen conditions and to thrive within the host's internal environment may offer insights into its ecological role in nutrient cycling and gut microbiome dynamics. Overall, the versatility in metabolic pathways and the specific ecological niche occupied by Escherichia coli strain 06-00048 highlight the complexity of host-microbe interactions, suggesting that this strain may contribute to the maintenance of gut health or play a role in the microbial community's resilience under fluctuating environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 06-00048

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 06-00048
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 06-00048


Gene Summary

Adenine Count

57677 bp

Thymine Count

58195 bp

Guanine Count

52255 bp

Cytosine Count

45720 bp

Genome Length

213847 bp

Protein-coding Genes

239 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
is3 family transposaseGJ11_RS00805P16940+368 - 67612049.0
is3 family transposaseGJ11_RS00810Not Available+677 - 117119075.8
glycosyltransferase family proteinGJ11_RS00815Not Available+1547 - 270743689.0
glycosyltransferase family 4 proteinGJ11_RS00820P26388+2730 - 397746391.9
glycosyltransferase family 4 proteinGJ11_RS00825Not Available+3974 - 514342776.6
abc transporter atp-binding proteinGJ11_RS00830Q3J7R8+5133 - 694767089.6
aminoglycoside phosphotransferase family proteinGJ11_RS00835Not Available+6937 - 822348581.5
phosphotransferaseGJ11_RS00840Not Available+8198 - 921138473.6
alginate export family proteinGJ11_RS00845Not Available+9388 - 1053344178.6
nucleotide sugar dehydrogenaseGJ11_RS00850Q04873+10565 - 1173744449.5

Displaying genes 1 – 10 of 239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm00007183-maleylpyruvateC7H4O6Chemical structure of 3-maleylpyruvateNot available
Average184.104Da
Monoisotopic184.001885009Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00031592,5-dihydroxybenzoateC7H5O4Chemical structure of 2,5-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.0193322Da

Displaying 1–4 of 4 metabolites