Piscirickettsia salmonis strain PM15972A1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM15972A1 is characterized by having five replicons, which indicates a complex genome organization. This strain is part of the genus Piscirickettsia, known for its role as a fish pathogen, particularly affecting salmonids. It is essential to note the specific accessions associated with this strain: NZ_CP012413.1, NZ_CP012415.1, NZ_CP012417.1, NZ_CP012416.1, and NZ_CP012414.1. These accessions provide a reference for researchers and facilitate the retrieval of genomic information relevant to this strain. The presence of multiple replicons can influence the bacterium's adaptability and evolutionary potential, which may be crucial for its survival in various environments, particularly in aquaculture settings where it poses significant challenges. Understanding the genomic structure and the implications of having multiple replicons can help in developing strategies for disease management in affected fish populations. In summary, Piscirickettsia salmonis strain PM15972A1, with its five replicons and defined accessions, represents a significant concern in fish health management. The complexity of its genomic architecture may contribute to its pathogenicity and adaptability, emphasizing the need for continued research in this area to mitigate its impact on aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM15972A1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3,

Gene Summary

Adenine Count

26069 bp

Thymine Count

24724 bp

Guanine Count

15821 bp

Cytosine Count

15516 bp

Genome Length

82130 bp

Protein-coding Genes

89 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-polyprenyl-3-methyl-6-methoxy-1,4- benzoquinone monooxygenaseKW89_RS03280A4SV64Negative606905 - 60755224324.1
carbon-nitrogen hydrolase family proteinKW89_RS03285P55175Positive607730 - 60856930596.9
signal peptidase iKW89_RS03290Not AvailablePositive608645 - 60924722889.2
rnase adapter rapzKW89_RS03295A1U474Negative609248 - 61010232619.1
ribosome hibernation-promoting factor, hpf/yfia familyKW89_RS03300P17160Negative610459 - 61077011944.4
rna polymerase factor sigma-54KW89_RS03305A0A0H2ZGR9Negative610795 - 61218653079.3
lps export abc transporter atp-binding proteinKW89_RS03310P45073Negative612342 - 61307327366.0
lipopolysaccharide transport periplasmic protein lptaKW89_RS03315Not AvailableNegative613070 - 61364221261.9
lps export abc transporter periplasmic protein lptcKW89_RS03320Not AvailableNegative613629 - 61418620182.2
kpsf/gutq family sugar-phosphate isomeraseKW89_RS03325Q8D1Q8Negative614192 - 61517234938.4

Displaying genes 811 – 820 of 3454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.