Piscirickettsia salmonis strain PM15972A1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM15972A1 is characterized by having five replicons, which indicates a complex genome organization. This strain is part of the genus Piscirickettsia, known for its role as a fish pathogen, particularly affecting salmonids. It is essential to note the specific accessions associated with this strain: NZ_CP012413.1, NZ_CP012415.1, NZ_CP012417.1, NZ_CP012416.1, and NZ_CP012414.1. These accessions provide a reference for researchers and facilitate the retrieval of genomic information relevant to this strain. The presence of multiple replicons can influence the bacterium's adaptability and evolutionary potential, which may be crucial for its survival in various environments, particularly in aquaculture settings where it poses significant challenges. Understanding the genomic structure and the implications of having multiple replicons can help in developing strategies for disease management in affected fish populations. In summary, Piscirickettsia salmonis strain PM15972A1, with its five replicons and defined accessions, represents a significant concern in fish health management. The complexity of its genomic architecture may contribute to its pathogenicity and adaptability, emphasizing the need for continued research in this area to mitigate its impact on aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM15972A1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3,

Gene Summary

Adenine Count

26069 bp

Thymine Count

24724 bp

Guanine Count

15821 bp

Cytosine Count

15516 bp

Genome Length

82130 bp

Protein-coding Genes

89 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spy/cpxp family protein refolding chaperoneKW89_RS10320Not AvailablePositive2072651 - 207314218277.6
hypothetical proteinKW89_RS10325Not AvailableNegative2073286 - 207377718034.6
rossmann-like and duf2520 domain-containing proteinKW89_RS10330Not AvailablePositive2073980 - 207487032068.6
nucleoside triphosphate pyrophosphataseKW89_RS10335Q3JAF4Positive2075037 - 207563622307.8
signal peptide peptidase sppaKW89_RS10340O34525Negative2075717 - 207665534529.8
fusc family proteinKW89_RS10345Not AvailableNegative2076707 - 207780140741.1
na+/h+ antiporter nhaaKW89_RS10350Q21JV7Positive2077926 - 207924247721.6
nad-glutamate dehydrogenaseKW89_RS10355Q9HZE0Negative2079297 - 2084186185447.0
duf2835 family proteinKW89_RS10360Not AvailableNegative2084279 - 208458411613.2
prka family serine protein kinaseKW89_RS10365P0ACY5Positive2084692 - 208661473819.4

Displaying genes 2281 – 2290 of 3454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.