Piscirickettsia salmonis strain PM15972A1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM15972A1 is characterized by having five replicons, which indicates a complex genome organization. This strain is part of the genus Piscirickettsia, known for its role as a fish pathogen, particularly affecting salmonids. It is essential to note the specific accessions associated with this strain: NZ_CP012413.1, NZ_CP012415.1, NZ_CP012417.1, NZ_CP012416.1, and NZ_CP012414.1. These accessions provide a reference for researchers and facilitate the retrieval of genomic information relevant to this strain. The presence of multiple replicons can influence the bacterium's adaptability and evolutionary potential, which may be crucial for its survival in various environments, particularly in aquaculture settings where it poses significant challenges. Understanding the genomic structure and the implications of having multiple replicons can help in developing strategies for disease management in affected fish populations. In summary, Piscirickettsia salmonis strain PM15972A1, with its five replicons and defined accessions, represents a significant concern in fish health management. The complexity of its genomic architecture may contribute to its pathogenicity and adaptability, emphasizing the need for continued research in this area to mitigate its impact on aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM15972A1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3,

Gene Summary

Adenine Count

26069 bp

Thymine Count

24724 bp

Guanine Count

15821 bp

Cytosine Count

15516 bp

Genome Length

82130 bp

Protein-coding Genes

89 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nupc/nupg family nucleoside cnt transporterKW89_RS07310O32115Positive1445272 - 144650143801.7
hypothetical proteinKW89_RS19090Not AvailablePositive1446494 - 14466255068.35
fimv/hubp family polar landmark proteinKW89_RS07315Not AvailableNegative1446696 - 144725921732.7
anti-phage deoxyguanosine triphosphataseKW89_RS07320A1RJX1Positive1447334 - 144869252109.7
single-stranded dna-binding proteinKW89_RS07325P40947Negative1448943 - 144967126799.2
excinuclease abc subunit uvraKW89_RS07330Q9HWG0Positive1450044 - 1452863103460.0
is630 transposase-related proteinKW89_RS07335Not AvailablePositive1453018 - 145336814067.0
hypothetical proteinKW89_RS18230Not AvailableNegative1453730 - 14538765979.34
is3 family transposaseKW89_RS17045Not AvailableNegative1453910 - 14540475457.56
is30 family transposaseKW89_RS07340Not AvailablePositive1454193 - 145516737511.6

Displaying genes 1641 – 1650 of 3454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.