Piscirickettsia salmonis strain PM15972A1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Piscirickettsiaceae

Genus

Piscirickettsia

Description

Piscirickettsia salmonis strain PM15972A1 is characterized by having five replicons, which indicates a complex genome organization. This strain is part of the genus Piscirickettsia, known for its role as a fish pathogen, particularly affecting salmonids. It is essential to note the specific accessions associated with this strain: NZ_CP012413.1, NZ_CP012415.1, NZ_CP012417.1, NZ_CP012416.1, and NZ_CP012414.1. These accessions provide a reference for researchers and facilitate the retrieval of genomic information relevant to this strain. The presence of multiple replicons can influence the bacterium's adaptability and evolutionary potential, which may be crucial for its survival in various environments, particularly in aquaculture settings where it poses significant challenges. Understanding the genomic structure and the implications of having multiple replicons can help in developing strategies for disease management in affected fish populations. In summary, Piscirickettsia salmonis strain PM15972A1, with its five replicons and defined accessions, represents a significant concern in fish health management. The complexity of its genomic architecture may contribute to its pathogenicity and adaptability, emphasizing the need for continued research in this area to mitigate its impact on aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyPiscirickettsiaceae
GenusPiscirickettsia
SpeciesPiscirickettsia salmonis
Strainstrain PM15972A1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3,

Gene Summary

Adenine Count

26069 bp

Thymine Count

24724 bp

Guanine Count

15821 bp

Cytosine Count

15516 bp

Genome Length

82130 bp

Protein-coding Genes

89 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dotu family type iv/vi secretion system proteinKW89_RS06440Not AvailablePositive1275195 - 127582424490.2
l,d-transpeptidase family proteinKW89_RS06445P76193Negative1275895 - 127680934979.5
translocation/assembly module tamb domain-containing proteinKW89_RS06450Not AvailableNegative1276840 - 1280142121258.0
autotransporter assembly complex family proteinKW89_RS06455P44038Negative1280139 - 128196267684.4
hypothetical proteinKW89_RS06460Not AvailableNegative1282002 - 128240013902.2
trna dihydrouridine(20/20a) synthase dusaKW89_RS06465Q8ZJ14Negative1282521 - 128352537571.2
efflux rnd transporter periplasmic adaptor subunitKW89_RS06470Not AvailablePositive1283958 - 128540652137.5
efflux rnd transporter permease subunitKW89_RS06475Q57124Positive1285493 - 1288549110605.0
transposaseKW89_RS19340Not AvailableNegative1288532 - 12887026042.15
hypothetical proteinKW89_RS18470Not AvailableNegative1288768 - 12889055106.07

Displaying genes 1461 – 1470 of 3454 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.