Pediococcus damnosus strain TMW 2.1535

Coccus

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus damnosus strain TMW 2.1535 is a Gram-positive bacterium characterized by its coccus shape. This strain is primarily found in habitats associated with fermentation processes, including beer, cider, and wine production, indicating its relevance in the brewing and fermentation industries. It possesses flagella, which suggests potential motility, although the specific implications of this trait in its ecological niche remain unclear. Genetically, Pediococcus damnosus strain TMW 2.1535 has a notable characteristic of having four replicons, which may have implications for its genetic stability and adaptability in various environments. The strain is associated with Homo sapiens as a host, indicating a potential link to human health. Notably, there is an association with Fournier's gangrene, a severe soft tissue infection, highlighting the importance of understanding its pathogenic potential. The strain is cataloged under several accessions (NZ_CP012288.1, NZ_CP012289.1, NZ_CP012291.1, NZ_CP012292.1), which may serve as valuable resources for further genomic studies and investigations into its properties and interactions. Understanding Pediococcus damnosus strain TMW 2.1535's role in both fermentation and its potential health effects emphasizes the complex relationship between microorganisms and their environments. Its presence in food-related habitats alongside its association with a serious health condition reveals the duality of microbial life, where beneficial fermentation processes can coexist with pathogenic potential, underscoring the need for careful monitoring in brewery and fermentation contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus damnosus
Strainstrain TMW 2.1535

Profile

Physiology
Gram staining propertiesPositive
ShapeCoccus
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pediococcus damnosus strain TMW 2.1535
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbeer; brewery; cider; wine
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-1, complete

Gene Summary

Adenine Count

6001 bp

Thymine Count

6691 bp

Guanine Count

4147 bp

Cytosine Count

4470 bp

Genome Length

21309 bp

Protein-coding Genes

23 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive197345 - 197461Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive197553 - 200475Not Available
Trna-alaNot AvailableNot AvailablePositive200649 - 200721Not Available
Trna-ileNot AvailableNot AvailablePositive200735 - 200809Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive200898 - 202475Not Available
s1 rna-binding domain-containing proteinADU72_RS00925Not AvailableNegative202807 - 20320214897.7
vtt domain-containing proteinADU72_RS00930Not AvailablePositive203316 - 20396024077.9
tigr01906 family membrane proteinADU72_RS00935Not AvailableNegative204043 - 20466624534.7
tigr01457 family had-type hydrolaseADU72_RS00940Not AvailableNegative204671 - 20544128496.1
yutd family proteinADU72_RS00945Not AvailableNegative205452 - 20605423475.0

Displaying genes 221 – 230 of 2335 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fournier ??s gangreneCausesPMC12859440
Fournier s gangreneCausesPMC12859440

Displaying health effects 1 – 2 of 2 in total