Pediococcus damnosus strain TMW 2.1535

Coccus

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus damnosus strain TMW 2.1535 is a Gram-positive bacterium characterized by its coccus shape. This strain is primarily found in habitats associated with fermentation processes, including beer, cider, and wine production, indicating its relevance in the brewing and fermentation industries. It possesses flagella, which suggests potential motility, although the specific implications of this trait in its ecological niche remain unclear. Genetically, Pediococcus damnosus strain TMW 2.1535 has a notable characteristic of having four replicons, which may have implications for its genetic stability and adaptability in various environments. The strain is associated with Homo sapiens as a host, indicating a potential link to human health. Notably, there is an association with Fournier's gangrene, a severe soft tissue infection, highlighting the importance of understanding its pathogenic potential. The strain is cataloged under several accessions (NZ_CP012288.1, NZ_CP012289.1, NZ_CP012291.1, NZ_CP012292.1), which may serve as valuable resources for further genomic studies and investigations into its properties and interactions. Understanding Pediococcus damnosus strain TMW 2.1535's role in both fermentation and its potential health effects emphasizes the complex relationship between microorganisms and their environments. Its presence in food-related habitats alongside its association with a serious health condition reveals the duality of microbial life, where beneficial fermentation processes can coexist with pathogenic potential, underscoring the need for careful monitoring in brewery and fermentation contexts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus damnosus
Strainstrain TMW 2.1535

Profile

Physiology
Gram staining propertiesPositive
ShapeCoccus
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pediococcus damnosus strain TMW 2.1535
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbeer; brewery; cider; wine
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-1, complete

Gene Summary

Adenine Count

6001 bp

Thymine Count

6691 bp

Guanine Count

4147 bp

Cytosine Count

4470 bp

Genome Length

21309 bp

Protein-coding Genes

23 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l34ADU72_RS11865Not AvailablePositive1064219 - 10643535360.77
ribonuclease p protein componentADU72_RS04965Not AvailablePositive1064474 - 106483314018.1
membrane protein insertase yidcADU72_RS04970Not AvailablePositive1064834 - 106567031437.1
rna-binding cell elongation regulator jag/elorADU72_RS04975Not AvailablePositive1065744 - 106655330359.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeADU72_RS04980Not AvailablePositive1066718 - 106810951066.5
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgADU72_RS04985Not AvailablePositive1068182 - 107008971032.5
5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferaseADU72_RS04990Not AvailablePositive1070506 - 107277985779.0
methylenetetrahydrofolate reductaseADU72_RS04995Not AvailablePositive1072766 - 107365932798.2
isl3 family transposaseADU72_RS05000Not AvailableNegative1073825 - 107506647733.8
had family hydrolaseADU72_RS05005Not AvailableNegative1075263 - 107591325206.9

Displaying genes 1041 – 1050 of 2335 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fournier ??s gangreneCausesPMC12859440
Fournier s gangreneCausesPMC12859440

Displaying health effects 1 – 2 of 2 in total