Chondromyces crocatus strain Cm c5

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Chondromyces

Description

Chondromyces crocatus strain Cm c5 is a notable bacterium primarily found in the rhizosphere, the region of soil associated with plant roots. This habitat is critical for plant health and soil ecology, as it is where various microbial interactions occur, influencing nutrient availability and plant growth. The strain is characterized by having a single replicon, which describes its genetic organization. This trait can impact the bacterium's replication, gene expression, and overall adaptability to environmental changes. The genetic information for Chondromyces crocatus strain Cm c5 is cataloged under the accession number NZ_CP012159.1, which provides a reference for researchers interested in studying its genetics and biological functions. Understanding the ecological role of Chondromyces crocatus in the rhizosphere is essential, as rhizobacteria are known to enhance plant growth and health through various mechanisms such as nutrient solubilization, production of phytohormones, and suppression of plant pathogens. By inhabiting this critical zone, Chondromyces crocatus may play a significant part in the complex interactions between plants and soil microorganisms, ultimately contributing to soil fertility and ecosystem stability.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusChondromyces
SpeciesChondromyces crocatus
Strainstrain Cm c5

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chondromyces crocatus strain Cm c5 chromosome, complete genome.

Gene Summary

Adenine Count

1774836 bp

Thymine Count

1788613 bp

Guanine Count

3916440 bp

Cytosine Count

3908243 bp

Genome Length

11388132 bp

Protein-coding Genes

8163 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyprenyl synthetase family proteinCMC5_RS21455Not AvailablePositive5859420 - 586048137224.9
3-deoxy-7-phosphoheptulonate synthaseCMC5_RS21460Not AvailablePositive5860488 - 586158537776.3
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieCMC5_RS21465Not AvailablePositive5861585 - 586241229002.7
hypothetical proteinCMC5_RS46015Not AvailableNegative5862481 - 586274710312.5
isochorismate synthaseCMC5_RS21470Not AvailablePositive5862760 - 586388138949.4
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseCMC5_RS21475Not AvailablePositive5863878 - 586574663944.1
1,4-dihydroxy-2-naphthoate polyprenyltransferaseCMC5_RS21480Not AvailablePositive5865743 - 586672933464.6
mandelate racemase/muconate lactonizing enzyme family proteinCMC5_RS21485Not AvailablePositive5866779 - 586789438403.5
class i adenylate-forming enzyme family proteinCMC5_RS21490Not AvailablePositive5867891 - 586947756053.5
hypothetical proteinCMC5_RS21495Not AvailablePositive5869595 - 587049131204.8

Displaying genes 4271 – 4280 of 8271 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm00162722-(Methoxymethyl)furanC6H8O2Chemical structure of 2-(Methoxymethyl)furanNULL
Average112.1265Da
Monoisotopic112.0524295Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.