Celeribacter marinus strain IMCC12053

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Celeribacter

Description

Celeribacter marinus strain IMCC12053 is a Gram-negative, rod-shaped bacterium. It is characterized by a single replicon, which is a notable feature in its genomic structure. The strain is cataloged under the accession number NZ_CP012023.1, allowing for its identification and further study in genomic databases. The Gram-negative classification indicates that this bacterium possesses an outer membrane, which can contribute to its resilience in various environments, potentially influencing its ecological interactions. The rod shape is typical of many bacteria and may facilitate movement and colonization in aquatic environments, considering that Celeribacter marinus is associated with marine habitats. Understanding the traits of Celeribacter marinus strain IMCC12053 can provide insights into its role within its ecosystem. As a marine bacterium, it may play a significant part in the nutrient cycling processes of its environment. The adaptability of Gram-negative bacteria, combined with its rod shape, suggests that Celeribacter marinus may be well-suited to thrive in diverse marine conditions, contributing to the overall microbial diversity and ecosystem functioning in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusCeleribacter
SpeciesCeleribacter marinus
Strainstrain IMCC12053

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Celeribacter marinus strain IMCC12053 chromosome, complete genome.

Gene Summary

Adenine Count

693519 bp

Thymine Count

661585 bp

Guanine Count

842847 bp

Cytosine Count

898754 bp

Genome Length

3096705 bp

Protein-coding Genes

2990 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtpase hflxIMCC12053_RS02820A0L4B2Negative588096 - 58939148419.9
rna chaperone hfqIMCC12053_RS02825Q5LRP4Negative589573 - 5898128917.84
trkh family potassium uptake proteinIMCC12053_RS02830Not AvailableNegative589979 - 59152655910.1
trk system potassium transporter trkaIMCC12053_RS02835Q04856Negative591526 - 59290249944.0
sigma-54 dependent transcriptional regulatorIMCC12053_RS02840Q04849Negative592995 - 59439851384.5
pas domain-containing sensor histidine kinaseIMCC12053_RS02845Q04850Negative594420 - 59668482739.7
response regulatorIMCC12053_RS02850P09432Negative596836 - 59821250278.8
nitrogen regulation protein nr(ii)IMCC12053_RS02855P09431Negative598278 - 59934838258.1
trna dihydrouridine synthase dusbIMCC12053_RS02860Q08111Negative599345 - 60032534138.1
bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseIMCC12053_RS02865Q1GGW9Positive600496 - 60164139944.5

Displaying genes 661 – 670 of 3098 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

216 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 216 metabolites

Health Effects

No health effects information available for this bacterium.