Celeribacter marinus strain IMCC12053

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Celeribacter

Description

Celeribacter marinus strain IMCC12053 is a Gram-negative, rod-shaped bacterium. It is characterized by a single replicon, which is a notable feature in its genomic structure. The strain is cataloged under the accession number NZ_CP012023.1, allowing for its identification and further study in genomic databases. The Gram-negative classification indicates that this bacterium possesses an outer membrane, which can contribute to its resilience in various environments, potentially influencing its ecological interactions. The rod shape is typical of many bacteria and may facilitate movement and colonization in aquatic environments, considering that Celeribacter marinus is associated with marine habitats. Understanding the traits of Celeribacter marinus strain IMCC12053 can provide insights into its role within its ecosystem. As a marine bacterium, it may play a significant part in the nutrient cycling processes of its environment. The adaptability of Gram-negative bacteria, combined with its rod shape, suggests that Celeribacter marinus may be well-suited to thrive in diverse marine conditions, contributing to the overall microbial diversity and ecosystem functioning in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusCeleribacter
SpeciesCeleribacter marinus
Strainstrain IMCC12053

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Celeribacter marinus strain IMCC12053 chromosome, complete genome.

Gene Summary

Adenine Count

693519 bp

Thymine Count

661585 bp

Guanine Count

842847 bp

Cytosine Count

898754 bp

Genome Length

3096705 bp

Protein-coding Genes

2990 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cbb3-type cytochrome oxidase assembly protein ccosIMCC12053_RS05965Not AvailableNegative1223352 - 12235136025.08
heavy metal translocating p-type atpaseIMCC12053_RS05970O33533Negative1223515 - 122570176049.2
fixh family proteinIMCC12053_RS05975Not AvailableNegative1225725 - 122619817285.5
cytochrome c oxidase accessory protein ccogIMCC12053_RS05980P54932Negative1226200 - 122763053854.5
cytochrome-c oxidase, cbb3-type subunit iiiIMCC12053_RS05985Q3J015Negative1227973 - 122883331139.9
cbb3-type cytochrome c oxidase subunit 3IMCC12053_RS05990Not AvailableNegative1228830 - 12290127030.33
cytochrome-c oxidase, cbb3-type subunit iiIMCC12053_RS05995Not AvailableNegative1229025 - 122975027221.3
cytochrome-c oxidase, cbb3-type subunit iIMCC12053_RS06000P98059Negative1229765 - 123136059509.4
universal stress proteinIMCC12053_RS06005Not AvailablePositive1231734 - 123257330234.4
transcriptional regulator fnrlIMCC12053_RS06010P51007Negative1232651 - 123339127464.6

Displaying genes 1291 – 1300 of 3098 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

216 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 216 metabolites

Health Effects

No health effects information available for this bacterium.