Limnohabitans sp. 103DPR2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. 103DPR2 is a bacterial strain characterized by the presence of a single replicon. This trait suggests a streamlined genomic organization, which can be advantageous for replication and cellular efficiency. The genomic data for this strain is accessible under the accession number NZ_CP011834.1, providing a valuable resource for further studies and analysis. Limnohabitans sp. is part of a genus known for its ecological significance, particularly in freshwater environments. Bacteria within this genus are often associated with the cycling of nutrients and may play a role in the degradation of organic materials, contributing to ecosystem health and stability. The presence of Limnohabitans sp. 103DPR2 in such environments highlights its potential contributions to biogeochemical processes. Understanding the genomic characteristics of Limnohabitans sp. 103DPR2 may provide insights into its metabolic capabilities and ecological interactions. For instance, the single replicon indicates a potential for efficient regulation of its genetic resources, which may influence its adaptability to varying environmental conditions. This adaptability is particularly important in freshwater ecosystems, where conditions can fluctuate. In summary, Limnohabitans sp. 103DPR2, with its single replicon and accessible genomic data, represents an important player in freshwater ecosystems, likely contributing to nutrient cycling and organic matter degradation. Further exploration of its genomic traits may enhance our understanding of its ecological role and functional capabilities in these environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. 103DPR2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. 103DPR2 chromosome, complete genome.

Gene Summary

Adenine Count

688046 bp

Thymine Count

688467 bp

Guanine Count

787653 bp

Cytosine Count

784629 bp

Genome Length

2948795 bp

Protein-coding Genes

2796 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system minor pseudopilin gspiL103DPR2_RS03305Not AvailableNegative686058 - 68646814859.1
prepilin-type n-terminal cleavage/methylation domain-containing proteinL103DPR2_RS03310Not AvailableNegative686465 - 68700719084.9
type ii secretion system major pseudopilin gspgL103DPR2_RS03315Not AvailableNegative686982 - 68742816029.2
hypothetical proteinL103DPR2_RS03320Not AvailablePositive687479 - 68795515737.2
threonine ammonia-lyase, biosyntheticL103DPR2_RS03325Not AvailableNegative687989 - 68953656535.4
osmc family proteinL103DPR2_RS03330Not AvailablePositive689771 - 69022015703.9
2-polyprenyl-3-methyl-6-methoxy-1,4- benzoquinone monooxygenaseL103DPR2_RS03335Not AvailableNegative690221 - 69088923582.3
porinL103DPR2_RS03340Not AvailablePositive691086 - 69211734604.3
abc transporter permeaseL103DPR2_RS03345Not AvailablePositive692301 - 69324233828.6
dipeptide/oligopeptide/nickel abc transporter permease/atp-binding proteinL103DPR2_RS03350Not AvailablePositive693239 - 69499662057.4

Displaying genes 661 – 670 of 2844 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.