Pseudomonas sp. DR 5-09

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. DR 5-09 is characterized by having a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number NZ_CP011566.1, allowing for easy reference in genomic databases. Pseudomonas species are known for their metabolic versatility and ability to thrive in various environments, including soil and water. This versatility often contributes to their role in bioremediation, where they can degrade pollutants and contribute to nutrient cycling. Understanding the genomic features of Pseudomonas sp. DR 5-09, particularly its single replicon structure, can provide insights into its evolutionary adaptations and functional capabilities. The simplicity of having one replicon may suggest a streamlined genetic architecture, which can facilitate efficient replication and gene expression in diverse habitats. In ecological contexts, Pseudomonas sp. DR 5-09 may play a significant role in microbial communities, potentially influencing ecosystem dynamics through its metabolic activities. Its documented traits suggest a capability for interacting with various substrates in its environment, highlighting its ecological importance. The study of this strain can contribute to a broader understanding of Pseudomonas species in environmental microbiology and their applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. DR 5-09
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. DR 5-09
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. DR 5-09 chromosome, complete genome.

Gene Summary

Adenine Count

1272927 bp

Thymine Count

1269076 bp

Guanine Count

1942294 bp

Cytosine Count

1943567 bp

Genome Length

6427864 bp

Protein-coding Genes

5711 genes

Non-Coding Genes

167 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease v subunit betaPDR5_RS03530P08394Positive810801 - 814490138110.0
exodeoxyribonuclease v subunit alphaPDR5_RS03535P04993Positive814487 - 81658977142.7
yfir family proteinPDR5_RS03540Not AvailablePositive816714 - 81728920373.9
diguanylate cyclase domain-containing proteinPDR5_RS03545P46139Positive817286 - 81855445681.0
ompa family proteinPDR5_RS03550P07021Positive818554 - 81905417764.2
lysr family transcriptional regulatorPDR5_RS03555Not AvailableNegative819051 - 81999835488.8
coa-acylating methylmalonate-semialdehyde dehydrogenasePDR5_RS03560Q0WM29Positive820148 - 82167454089.4
3-hydroxyisobutyrate dehydrogenasePDR5_RS03565Q54CX6Positive821684 - 82257130227.7
cupin domain-containing proteinPDR5_RS03570Not AvailableNegative822666 - 82301013060.7
daph/dapd/glmu-related proteinPDR5_RS03575Not AvailablePositive823652 - 82455131026.4

Displaying genes 801 – 810 of 5878 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

388 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 388 metabolites

Health Effects

No health effects information available for this bacterium.