Gemmatimonas phototrophica strain AP64

Gram-negativeRodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Gemmatimonas phototrophica strain AP64 is a Gram-negative, microaerophilic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain has a single replicon, which is relevant for its genetic stability and replication processes. The accession number for this strain is NZ_CP011454.1, which is used for referencing its genomic data in biological databases. As a microaerophile, Gemmatimonas phototrophica strain AP64 thrives in environments with low oxygen levels, indicating a specialization in habitats where oxygen is not abundant but is still necessary for its metabolic processes. The presence of flagella suggests that this strain is motile, allowing it to navigate its environment, which could be beneficial for finding optimal niches for growth and survival. The ecological role of Gemmatimonas phototrophica strain AP64 may be significant in environments where organic matter decomposition occurs under microaerophilic conditions. Its ability to thrive in such niches implies a contribution to nutrient cycling, potentially impacting soil chemistry and microbial community dynamics. This bacterium's unique adaptations highlight its ecological importance and potential roles in biogeochemical processes in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumGemmatimonadota
ClassGemmatimonadia
OrderGemmatimonadales
FamilyGemmatimonadaceae
GenusGemmatimonas
SpeciesGemmatimonas phototrophica
Strainstrain AP64

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Gemmatimonas phototrophica strain AP64
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmatimonas phototrophica strain AP64 chromosome, complete

Gene Summary

Adenine Count

845337 bp

Thymine Count

835235 bp

Guanine Count

1513972 bp

Cytosine Count

1522008 bp

Genome Length

4716552 bp

Protein-coding Genes

3911 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolase family proteinGEMMAAP_RS10690Not AvailableNegative2506185 - 250703931145.0
aminotransferase class iii-fold pyridoxal phosphate-dependent enzymeGEMMAAP_RS10695A0B885Negative2507078 - 250831643603.2
rna methyltransferaseGEMMAAP_RS10700A6TCF3Negative2508316 - 250920932340.7
heparinase ii/iii family proteinGEMMAAP_RS10705Not AvailableNegative2509255 - 251178090582.3
peptide abc transporter substrate-binding proteinGEMMAAP_RS10710Not AvailableNegative2512053 - 251366057421.1
abc transporter permeaseGEMMAAP_RS10715Not AvailablePositive2513667 - 251464134478.8
abc transporter permeaseGEMMAAP_RS10720Not AvailablePositive2514614 - 251552231085.7
glycosyl hydrolase-related proteinGEMMAAP_RS10725Q9KER1Negative2515494 - 251821498369.9
vtt domain-containing proteinGEMMAAP_RS10730P0ABP7Positive2518344 - 251898223346.2
superoxide dismutaseGEMMAAP_RS10735P00449Positive2519021 - 251962321975.8

Displaying genes 2131 – 2140 of 3967 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

258 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 258 metabolites

Health Effects

No health effects information available for this bacterium.