Gemmatimonas phototrophica strain AP64

microaerophile

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Taxonomy

KingdomPseudomonadati
PhylumGemmatimonadota
ClassGemmatimonadia
OrderGemmatimonadales
FamilyGemmatimonadaceae
GenusGemmatimonas
SpeciesGemmatimonas phototrophica
Strainstrain AP64

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmatimonas phototrophica strain AP64

NZ_CP011454.1

Gene Summary

Adenine Count

845337 bp

Thymine Count

835235 bp

Guanine Count

1513972 bp

Cytosine Count

1522008 bp

Genome Length

4716552 bp

Protein-coding Genes

3911 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaGEMMAAP_RS00010A8F8Y4+151 - 156952762.4
dna polymerase iii subunit betaGEMMAAP_RS00015Q9I7C4+1803 - 291541186.6
hypothetical proteinGEMMAAP_RS00020Not Available-3087 - 381526053.3
Ncrna_class:rnase_p_rnaNot AvailableNot Available+4021 - 4450Not Available
helix-turn-helix domain-containing proteinGEMMAAP_RS00030Not Available+4635 - 553733505.2
methyl-accepting chemotaxis proteinGEMMAAP_RS00035Not Available-5541 - 723859868.6
orotate phosphoribosyltransferaseGEMMAAP_RS00040Q7UYX5-7302 - 786219249.5
serine/threonine-protein kinaseGEMMAAP_RS00045Q9XBQ0-7874 - 883333787.5
gwxtd domain-containing proteinGEMMAAP_RS00050Not Available+8916 - 1033150995.2
dna polymerase iGEMMAAP_RS00055Q9HT80+10361 - 13312107330.0

Displaying genes 1 – 10 of 3967 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

258 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 258 metabolites