Salmonella enterica subsp. enterica serovar Typhimurium strain

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Typhimurium strain is a Gram-negative bacterium characterized by its spirilla shape and a tendency to form chains or exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe. It is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. Additionally, this strain exhibits microaerophilic characteristics, requiring lower levels of oxygen for growth compared to atmospheric conditions. The microaerophilic nature of Salmonella enterica Typhimurium suggests its adaptation to environments where oxygen is limited, such as the gastrointestinal tracts of various hosts. This adaptation may enhance its survival and metabolic efficiency in niche environments within its host, potentially allowing it to exploit specific organic substrates present in these habitats. Understanding the traits of this strain within the context of its ecological niche can offer insights into its interactions with host organisms and its role in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Typhimurium strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Typhimurium strain
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella enterica subsp. enterica serovar Typhimurium strain


Gene Summary

Adenine Count

12373 bp

Thymine Count

12428 bp

Guanine Count

8391 bp

Cytosine Count

9007 bp

Genome Length

42199 bp

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiation proteinSE14_RS25235P03067+696 - 155032602.3
hypothetical proteinSE14_RS25240P10027+1575 - 202117319.3
dna distortion polypeptide 3SE14_RS25245Not Available+2158 - 251413737.5
hypothetical proteinSE14_RS28805Not Available-2860 - 315911215.0
is1 family transposaseSE14_RS25255P0CF26-3491 - 418826655.5
hypothetical proteinSE14_RS28510Not Available-4276 - 458711628.0
plasmid partition protein pargSE14_RS25265Not Available-4603 - 48338634.28
para family proteinSE14_RS25270Not Available-4885 - 550522027.5
recombinase family proteinSE14_RS25275P22996+5798 - 644224575.5
damage-inducible type i toxin dinqSE14_RS27960Not Available-6597 - 66803014.05

Displaying genes 1 – 10 of 10391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

48 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm00004573,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dioneC19H24O4Chemical structure of 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dioneNot available
Average316.3915Da
Monoisotopic316.1674593Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001842(5Z,8Z,11Z,14Z)-eicosatetraenoateC20H31O2Chemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoateNot available
Average303.467Da
Monoisotopic303.2329538Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 48 metabolites