Sedimenticola thiotaurini strain SIP-G1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Sedimenticola thiotaurini strain SIP-G1 is characterized by its free-living biotic relationship and possesses two replicons. The strain is cataloged with the accession numbers NZ_CP011412.1 and NZ_CP011413.1, indicating its genetic material is available for further research and analysis. As a member of the Sedimenticola genus, S. thiotaurini is likely involved in biogeochemical cycles, particularly in sediment environments where it may play a role in the sulfur cycle. Its free-living nature suggests that it can thrive independently in various ecological niches, contributing to microbial diversity and ecosystem functionality. The presence of two replicons in its genomic structure may provide insights into its adaptability and metabolic capabilities, potentially allowing for flexibility in response to environmental changes. Such genetic features are often linked to the organism's evolutionary strategies, aiding survival in complex microbial communities. Overall, Sedimenticola thiotaurini strain SIP-G1 exemplifies the ecological significance of free-living microorganisms in sedimentary environments, highlighting their roles in nutrient cycling and ecosystem processes. Further studies on this strain could enhance understanding of its ecological functions and contributions to sediment microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola thiotaurini
Strainstrain SIP-G1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sedimenticola thiotaurini strain SIP-G1 chromosome, complete

Gene Summary

Adenine Count

832622 bp

Thymine Count

831553 bp

Guanine Count

1130158 bp

Cytosine Count

1134611 bp

Genome Length

3928944 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pepsy domain-containing proteinAAY24_RS00060Not AvailableNegative10660 - 1101012958.5
cbs domain-containing proteinAAY24_RS00065Not AvailablePositive11440 - 1189516630.6
uracil-dna glycosylase family proteinAAY24_RS00070O86222Positive12025 - 1261822450.1
riboflavin synthaseAAY24_RS00075P0AFU8Negative12619 - 1323922815.4
lysr substrate-binding domain-containing proteinAAY24_RS00080P16931Negative13285 - 1415731813.8
duf1127 domain-containing proteinAAY24_RS00085Not AvailablePositive14278 - 1454110069.3
pp2c family protein-serine/threonine phosphataseAAY24_RS00090P0AEV2Positive14830 - 1602044695.5
stas domain-containing proteinAAY24_RS00095Not AvailablePositive16020 - 1650517569.1
murein l,d-transpeptidase family proteinAAY24_RS00100Not AvailablePositive16620 - 1736628061.8
penicillin-binding protein 1bAAY24_RS00105Q9KUC0Positive17432 - 1982288627.5

Displaying genes 11 – 20 of 3693 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

192 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 192 metabolites

Health Effects

No health effects information available for this bacterium.