Flavisolibacter tropicus strain LCS9

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Flavisolibacter

Description

Flavisolibacter tropicus strain LCS9 is a Gram-negative, non-motile bacterium characterized by its rod-shaped morphology. This strain exhibits mesophilic properties, with an optimal growth temperature of 25°C. It possesses a single replicon, which is indicative of its genomic structure. The unique characteristics of Flavisolibacter tropicus strain LCS9 suggest its potential ecological niche in environments that maintain moderate temperatures, such as tropical and subtropical regions. The mesophilic nature of this bacterium aligns with the temperature ranges typically found in such habitats, potentially allowing it to thrive in nutrient-rich soils or decaying organic matter where the temperature remains stable. Understanding the traits of Flavisolibacter tropicus LCS9 can offer insights into its role within microbial communities, especially in biogeochemical cycles in tropical ecosystems. Its ability to survive and propagate at a specific temperature range may also reflect its adaptation to specific ecological interactions, influencing nutrient cycling and organic matter decomposition in its environment. Further research on this strain could reveal its contributions to ecosystem health and stability in tropical regions, highlighting its importance in microbial ecology. Access to its genomic data, referenced as NZ_CP011390.1, may facilitate deeper investigation into its metabolic pathways and ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusFlavisolibacter
SpeciesFlavisolibacter tropicus
Strainstrain LCS9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavisolibacter tropicus strain LCS9 chromosome, complete genome.

Gene Summary

Adenine Count

1739923 bp

Thymine Count

1734879 bp

Guanine Count

1229287 bp

Cytosine Count

1236774 bp

Genome Length

5940863 bp

Protein-coding Genes

4916 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSY85_RS04465Not AvailablePositive1096696 - 109777242485.0
efflux transporter outer membrane subunitSY85_RS04470Q9KJC1Negative1097882 - 109926750999.9
efflux rnd transporter permease subunitSY85_RS04475Q8G2M6Negative1099271 - 1102423113633.0
efflux rnd transporter periplasmic adaptor subunitSY85_RS04480Not AvailableNegative1102464 - 110384650945.8
class ii fructose-bisphosphate aldolaseSY85_RS04485Q0PAS0Positive1104717 - 110578439444.4
class i fructose-bisphosphate aldolaseSY85_RS04490P0A992Positive1105934 - 110698938450.8
nad(p)/fad-dependent oxidoreductaseSY85_RS04495Q9LID0Positive1107124 - 110841348041.5
duf5686 family proteinSY85_RS04500Not AvailableNegative1108391 - 111089596259.1
hypothetical proteinSY85_RS04505Not AvailablePositive1111011 - 11112027314.61
dna alkylation repair proteinSY85_RS04510P33381Positive1111309 - 111201625870.3

Displaying genes 901 – 910 of 4975 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

191 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 191 metabolites

Health Effects

No health effects information available for this bacterium.