Flavisolibacter tropicus strain LCS9

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Flavisolibacter

Description

Flavisolibacter tropicus strain LCS9 is a Gram-negative, non-motile bacterium characterized by its rod-shaped morphology. This strain exhibits mesophilic properties, with an optimal growth temperature of 25°C. It possesses a single replicon, which is indicative of its genomic structure. The unique characteristics of Flavisolibacter tropicus strain LCS9 suggest its potential ecological niche in environments that maintain moderate temperatures, such as tropical and subtropical regions. The mesophilic nature of this bacterium aligns with the temperature ranges typically found in such habitats, potentially allowing it to thrive in nutrient-rich soils or decaying organic matter where the temperature remains stable. Understanding the traits of Flavisolibacter tropicus LCS9 can offer insights into its role within microbial communities, especially in biogeochemical cycles in tropical ecosystems. Its ability to survive and propagate at a specific temperature range may also reflect its adaptation to specific ecological interactions, influencing nutrient cycling and organic matter decomposition in its environment. Further research on this strain could reveal its contributions to ecosystem health and stability in tropical regions, highlighting its importance in microbial ecology. Access to its genomic data, referenced as NZ_CP011390.1, may facilitate deeper investigation into its metabolic pathways and ecological functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusFlavisolibacter
SpeciesFlavisolibacter tropicus
Strainstrain LCS9

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavisolibacter tropicus strain LCS9 chromosome, complete genome.

Gene Summary

Adenine Count

1739923 bp

Thymine Count

1734879 bp

Guanine Count

1229287 bp

Cytosine Count

1236774 bp

Genome Length

5940863 bp

Protein-coding Genes

4916 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1735 domain-containing proteinSY85_RS21290Not AvailablePositive4970080 - 497105434903.3
duf3467 domain-containing proteinSY85_RS21295Not AvailablePositive4971155 - 497146611458.7
radc family proteinSY85_RS21300A5FMW5Negative4971723 - 497240325109.4
ribose-phosphate pyrophosphokinaseSY85_RS21310Q7MT83Positive4972740 - 497369034949.5
50s ribosomal protein l25SY85_RS21315B3ERN9Positive4973785 - 497437221588.3
aminoacyl-trna hydrolaseSY85_RS21320A6L8V3Positive4974451 - 497502921464.1
fumarylacetoacetate hydrolase family proteinSY85_RS21325Q93ZE5Positive4975173 - 497578423104.6
thiamine pyrophosphate-dependent enzymeSY85_RS21335Not AvailablePositive4976231 - 497828575753.7
hypothetical proteinSY85_RS21340Not AvailablePositive4979152 - 497983225584.2
deor/glpr family dna-binding transcription regulatorSY85_RS21345P0ACK4Negative4980023 - 498078727925.0

Displaying genes 4241 – 4250 of 4975 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

191 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 191 metabolites

Health Effects

No health effects information available for this bacterium.