Paenibacillus swuensis strain DY6

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus swuensis strain DY6 is characterized by a single replicon, which is significant for its genomic organization and stability. This strain is cataloged under the accession number NZ_CP011388.1, indicating its genetic sequence is publicly available for further study and analysis. Paenibacillus species are known for their diverse metabolic capabilities and ecological roles, often found in soil and rhizosphere environments. The specific traits and characteristics of strain DY6 contribute to our understanding of the functions and interactions of Paenibacillus within these ecosystems. This strain may play a role in nutrient cycling, plant growth promotion, or even biocontrol mechanisms. The presence of a single replicon suggests a streamlined genomic architecture, which can be advantageous for efficiency in resource utilization and adaptability to environmental changes. This trait may also facilitate the study of gene function and regulation in this bacterium, opening pathways for potential biotechnological applications. In summary, Paenibacillus swuensis strain DY6, with its single replicon and identifiable genetic accession, presents a valuable opportunity to explore the ecological significance of its metabolic capabilities within its habitat. Understanding these traits can enhance our knowledge of microbial interactions in soil ecosystems and their potential applications in agriculture and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus swuensis
Strainstrain DY6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus swuensis strain DY6 chromosome, complete genome.

Gene Summary

Adenine Count

1275179 bp

Thymine Count

1284762 bp

Guanine Count

1207863 bp

Cytosine Count

1244795 bp

Genome Length

5012599 bp

Protein-coding Genes

4451 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinSY83_RS03685Not AvailablePositive864526 - 86486113210.3
hypothetical proteinSY83_RS03690Not AvailableNegative865137 - 86585026367.2
hypothetical proteinSY83_RS03695Not AvailableNegative865847 - 86700442735.1
hypothetical proteinSY83_RS03700Not AvailableNegative867004 - 86766023684.9
rna polymerase sigma factorSY83_RS03705Not AvailableNegative867657 - 86825022705.9
gnat family n-acetyltransferaseSY83_RS03710Not AvailableNegative868365 - 86876915505.7
nad-dependent malic enzymeSY83_RS03715P16468Positive868936 - 87035451213.2
chromosome condensation regulatorSY83_RS03720Not AvailableNegative870657 - 87157131907.5
bifunctional transcriptional activator/dna repair enzyme adaaSY83_RS03725P19219Negative871580 - 87213721283.8
sdr family oxidoreductaseSY83_RS03730Q49117Positive872328 - 87309226812.1

Displaying genes 751 – 760 of 4572 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

195 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da

Displaying 1–10 of 195 metabolites

Health Effects

No health effects information available for this bacterium.