Paenibacillus swuensis strain DY6

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus swuensis strain DY6 is characterized by a single replicon, which is significant for its genomic organization and stability. This strain is cataloged under the accession number NZ_CP011388.1, indicating its genetic sequence is publicly available for further study and analysis. Paenibacillus species are known for their diverse metabolic capabilities and ecological roles, often found in soil and rhizosphere environments. The specific traits and characteristics of strain DY6 contribute to our understanding of the functions and interactions of Paenibacillus within these ecosystems. This strain may play a role in nutrient cycling, plant growth promotion, or even biocontrol mechanisms. The presence of a single replicon suggests a streamlined genomic architecture, which can be advantageous for efficiency in resource utilization and adaptability to environmental changes. This trait may also facilitate the study of gene function and regulation in this bacterium, opening pathways for potential biotechnological applications. In summary, Paenibacillus swuensis strain DY6, with its single replicon and identifiable genetic accession, presents a valuable opportunity to explore the ecological significance of its metabolic capabilities within its habitat. Understanding these traits can enhance our knowledge of microbial interactions in soil ecosystems and their potential applications in agriculture and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus swuensis
Strainstrain DY6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus swuensis strain DY6 chromosome, complete genome.

Gene Summary

Adenine Count

1275179 bp

Thymine Count

1284762 bp

Guanine Count

1207863 bp

Cytosine Count

1244795 bp

Genome Length

5012599 bp

Protein-coding Genes

4451 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide exchange factor grpeSY83_RS14560Q9LCQ6Positive3309692 - 331030023017.2
molecular chaperone dnakSY83_RS14565Q9LCQ5Positive3310323 - 331217065585.5
molecular chaperone dnajSY83_RS14570Q9LCQ4Positive3312259 - 331337440674.8
lcp family proteinSY83_RS14575Not AvailablePositive3313655 - 331470138618.9
had family hydrolaseSY83_RS14580P96741Negative3314768 - 331557729743.8
deor/glpr family dna-binding transcription regulatorSY83_RS14585Not AvailableNegative3315555 - 331634629679.7
duf3889 domain-containing proteinSY83_RS14590Not AvailableNegative3316486 - 331681211889.6
yfhd family proteinSY83_RS22815Not AvailablePositive3316925 - 33170956331.12
hypothetical proteinSY83_RS14595Not AvailablePositive3317099 - 331747012650.1
50s ribosomal protein l11 methyltransferaseSY83_RS14600Q92BP0Positive3317644 - 331862735933.4

Displaying genes 2961 – 2970 of 4572 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

195 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da

Displaying 1–10 of 195 metabolites

Health Effects

No health effects information available for this bacterium.