Methanobrevibacter millerae strain SM9

Gram-positiveRod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanobacteria

Order

Methanobacteriales

Family

Methanobacteriaceae

Genus

Methanobrevibacter

Description

Methanobrevibacter millerae strain SM9 is a Gram-positive, rod-shaped archaeon primarily found in the colonic digesta and rumen of sheep (Ovis aries). This strain is characterized by having a single replicon, which is typical for many archaeal species. The presence of Methanobrevibacter millerae in the rumen highlights its role in the digestion process of ruminants, where it contributes to the fermentation of complex carbohydrates and the production of methane as a metabolic byproduct. As a methanogen, Methanobrevibacter millerae is involved in the anaerobic degradation of organic matter, facilitating the conversion of hydrogen and carbon dioxide into methane. This process is crucial not only for the energy balance of the host but also for the overall ecology of the rumen environment. Methane production is a significant aspect of ruminant digestion, impacting both the host's digestive efficiency and the greenhouse gas emissions from livestock. The strain is cataloged under the accession number NZ_CP011266.1, which contributes to the understanding of its genetic and functional characteristics. The ecological role of Methanobrevibacter millerae strain SM9 in sheep rumen underscores the intricate relationships between host animals and their microbiota, particularly in nutrient cycling and methane emissions in agricultural settings. Understanding these dynamics can be important for developing strategies aimed at reducing methane emissions from ruminants while maintaining their digestive health.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanobacteria
OrderMethanobacteriales
FamilyMethanobacteriaceae
GenusMethanobrevibacter
SpeciesMethanobrevibacter millerae
Strainstrain SM9

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcolonic digesta; rumen; sheep rumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanobrevibacter millerae strain SM9


Gene Summary

Adenine Count

864358 bp

Thymine Count

870058 bp

Guanine Count

403379 bp

Cytosine Count

405743 bp

Genome Length

2543538 bp

Protein-coding Genes

2331 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylated-dna--[protein]-cysteine s-methyltransferaseSM9_RS00300Not AvailablePositive73838 - 7433818608.2
hypothetical proteinSM9_RS00305Not AvailableNegative74335 - 7477217028.5
hypothetical proteinSM9_RS00310Not AvailableNegative74863 - 7630554166.5
ketol-acid reductoisomeraseSM9_RS00315Not AvailablePositive76517 - 7750936115.7
methanogenesis marker 12 proteinSM9_RS00320Not AvailablePositive77609 - 7861636048.9
lsm domain-containing proteinSM9_RS00325Not AvailableNegative78649 - 788467409.75
hypothetical proteinSM9_RS12115Not AvailablePositive78921 - 790645464.6
5'/3'-nucleotidase sureSM9_RS00330Not AvailableNegative79053 - 7983228135.9
is4 family transposaseSM9_RS00335Not AvailablePositive80123 - 8138850101.8
restriction endonucleaseSM9_RS00340Not AvailablePositive81708 - 8261334413.3

Displaying genes 61 – 70 of 2379 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.