Pandoraea oxalativorans strain DSM 23570

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea oxalativorans strain DSM 23570 is a Gram-negative, rod-shaped bacterium. This organism is notable for its unique genomic structure, containing three replicons, which can have implications for its genetic diversity and adaptability. The strain has been assigned several accessions in public databases, specifically NZ_CP011253.3, NZ_CP011519.2, and NZ_CP011520.2. These accessions provide a resource for researchers interested in studying the genomic features and characteristics of this bacterium. Biologically, Pandoraea species are often associated with specific ecological niches, particularly in environments where they may play roles in biogeochemical cycles. The ability of Pandoraea oxalativorans to potentially degrade oxalic acid suggests its involvement in nutrient cycling, particularly in soils or environments rich in organic acids. This trait may highlight its ecological significance in the decomposition processes and interactions within microbial communities. In conclusion, the characteristics of Pandoraea oxalativorans strain DSM 23570, including its Gram-negative status, rod shape, and unique genomic composition with three replicons, together suggest its adaptability and potential functional roles in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea oxalativorans
Strainstrain DSM 23570

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea oxalativorans strain DSM 23570 chromosome, complete

Gene Summary

Adenine Count

1034677 bp

Thymine Count

1041575 bp

Guanine Count

1770815 bp

Cytosine Count

1783244 bp

Genome Length

5630311 bp

Protein-coding Genes

4921 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductaseMB84_RS16205Not AvailableNegative3678274 - 367953044838.5
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadMB84_RS16210Not AvailablePositive3679621 - 368065236278.6
gtp cyclohydrolase fole2MB84_RS16215Not AvailableNegative3680765 - 368157430050.0
1-deoxy-d-xylulose-5-phosphate synthaseMB84_RS16220Not AvailableNegative3681774 - 368369068431.3
polyprenyl synthetase family proteinMB84_RS16225Not AvailableNegative3683939 - 368483531115.0
exodeoxyribonuclease vii small subunitMB84_RS16230Not AvailableNegative3684957 - 36852299799.58
aromatic ring-hydroxylating oxygenase subunit alphaMB84_RS16235Not AvailablePositive3685458 - 368657343053.1
dmt family transporterMB84_RS16240Not AvailablePositive3686854 - 368770830360.1
sulfurtransferaseMB84_RS16245Not AvailablePositive3687751 - 368863531550.2
zip family metal transporterMB84_RS16250Not AvailableNegative3688706 - 368951528615.0

Displaying genes 3261 – 3270 of 5233 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.