Pandoraea oxalativorans strain DSM 23570

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pandoraea

Description

Pandoraea oxalativorans strain DSM 23570 is a Gram-negative, rod-shaped bacterium. This organism is notable for its unique genomic structure, containing three replicons, which can have implications for its genetic diversity and adaptability. The strain has been assigned several accessions in public databases, specifically NZ_CP011253.3, NZ_CP011519.2, and NZ_CP011520.2. These accessions provide a resource for researchers interested in studying the genomic features and characteristics of this bacterium. Biologically, Pandoraea species are often associated with specific ecological niches, particularly in environments where they may play roles in biogeochemical cycles. The ability of Pandoraea oxalativorans to potentially degrade oxalic acid suggests its involvement in nutrient cycling, particularly in soils or environments rich in organic acids. This trait may highlight its ecological significance in the decomposition processes and interactions within microbial communities. In conclusion, the characteristics of Pandoraea oxalativorans strain DSM 23570, including its Gram-negative status, rod shape, and unique genomic composition with three replicons, together suggest its adaptability and potential functional roles in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPandoraea
SpeciesPandoraea oxalativorans
Strainstrain DSM 23570

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pandoraea oxalativorans strain DSM 23570 chromosome, complete

Gene Summary

Adenine Count

1034677 bp

Thymine Count

1041575 bp

Guanine Count

1770815 bp

Cytosine Count

1783244 bp

Genome Length

5630311 bp

Protein-coding Genes

4921 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ybdd/yjix family proteinMB84_RS00555Not AvailablePositive131549 - 1317467403.92
oxygen-independent coproporphyrinogen iii oxidaseMB84_RS00560Not AvailableNegative131884 - 13329351329.3
lysr family transcriptional regulatorMB84_RS00565Not AvailablePositive133876 - 13483835283.4
dna topoisomerase iiiMB84_RS00570Not AvailableNegative134964 - 13767299863.8
thioredoxin family proteinMB84_RS00575Not AvailableNegative137834 - 13822313954.7
dna-processing protein dpraMB84_RS00580Not AvailableNegative138340 - 13979450095.7
peptide deformylaseMB84_RS00585Not AvailablePositive139924 - 14042719257.4
arnt family glycosyltransferaseMB84_RS00590Not AvailablePositive140591 - 14238164796.5
methionyl-trna formyltransferaseMB84_RS00595Not AvailablePositive142477 - 14345434362.4
zinc metalloprotease htpxMB84_RS00600Not AvailablePositive143691 - 14455131120.1

Displaying genes 111 – 120 of 5233 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.