Lysobacter gummosus strain 3.2.11

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter gummosus strain 3.2.11 is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic metabolism. This strain has been isolated from the skin of the amphibian Plethodon cinereus, commonly known as the Eastern Red-backed Salamander. Its presence in such a habitat suggests a potential role in the microbial community associated with amphibian skin, which is known to be significant for various ecological interactions. The strain has a single replicon, indicating a simpler genomic structure compared to bacteria with multiple replicons. This trait may influence its genetic stability and adaptability within its niche environment. The isolation of L. gummosus from amphibian skin points to its possible involvement in the skin microbiome, which plays a critical role in the health and disease resistance of amphibians. Understanding the specific interactions between L. gummosus and its host, Plethodon cinereus, could provide insights into the broader ecological dynamics of amphibian-associated microorganisms. The study of this strain may reveal important functions such as antimicrobial activity or contributions to skin health, highlighting the intricate relationships between amphibians and their microbiota. This relationship is particularly relevant given the global decline of amphibian populations, where microbial communities may influence susceptibility to diseases and environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter gummosus
Strainstrain 3.2.11

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter gummosus strain 3.2.11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatamphibian skin
Biotic relationshipNot Available
Host(s)Plethodon cinereus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter gummosus strain 3.2.11 chromosome, complete genome.

Gene Summary

Adenine Count

1015846 bp

Thymine Count

1011071 bp

Guanine Count

2010809 bp

Cytosine Count

2018892 bp

Genome Length

6056618 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining protein mredLG3211_RS20255Not AvailableNegative4995461 - 499594618038.9
rod shape-determining protein mrecLG3211_RS20260Not AvailableNegative4995943 - 499711240461.1
rod shape-determining proteinLG3211_RS20265Not AvailableNegative4997283 - 499832937410.4
carbohydrate kinase family proteinLG3211_RS20270Not AvailablePositive4998781 - 499971335134.7
gh25 family lysozymeLG3211_RS20275Not AvailableNegative5000241 - 500097527061.1
hypothetical proteinLG3211_RS20280Not AvailableNegative5001087 - 500181826496.6
alpha/beta fold hydrolaseLG3211_RS20285Not AvailableNegative5001815 - 500279236621.8
m1 family metallopeptidaseLG3211_RS20290Not AvailableNegative5002817 - 500478171501.6
sdr family nad(p)-dependent oxidoreductaseLG3211_RS20295Not AvailablePositive5005121 - 500586424902.7
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieLG3211_RS20300Not AvailableNegative5006143 - 500690728650.3

Displaying genes 4171 – 4180 of 5042 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.