Lysobacter gummosus strain 3.2.11

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter gummosus strain 3.2.11 is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic metabolism. This strain has been isolated from the skin of the amphibian Plethodon cinereus, commonly known as the Eastern Red-backed Salamander. Its presence in such a habitat suggests a potential role in the microbial community associated with amphibian skin, which is known to be significant for various ecological interactions. The strain has a single replicon, indicating a simpler genomic structure compared to bacteria with multiple replicons. This trait may influence its genetic stability and adaptability within its niche environment. The isolation of L. gummosus from amphibian skin points to its possible involvement in the skin microbiome, which plays a critical role in the health and disease resistance of amphibians. Understanding the specific interactions between L. gummosus and its host, Plethodon cinereus, could provide insights into the broader ecological dynamics of amphibian-associated microorganisms. The study of this strain may reveal important functions such as antimicrobial activity or contributions to skin health, highlighting the intricate relationships between amphibians and their microbiota. This relationship is particularly relevant given the global decline of amphibian populations, where microbial communities may influence susceptibility to diseases and environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter gummosus
Strainstrain 3.2.11

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter gummosus strain 3.2.11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatamphibian skin
Biotic relationshipNot Available
Host(s)Plethodon cinereus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter gummosus strain 3.2.11 chromosome, complete genome.

Gene Summary

Adenine Count

1015846 bp

Thymine Count

1011071 bp

Guanine Count

2010809 bp

Cytosine Count

2018892 bp

Genome Length

6056618 bp

Protein-coding Genes

4924 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tsskLG3211_RS11370Not AvailablePositive2800196 - 280160552298.4
dotu family type iv/vi secretion system proteinLG3211_RS11375Not AvailablePositive2801613 - 280295649159.6
type vi secretion protein icmf/tssm n-terminal domain-containing proteinLG3211_RS11380Not AvailablePositive2802953 - 2806582133098.0
type vi secretion system protein tssaLG3211_RS11385Not AvailablePositive2806618 - 280768837855.6
type vi secretion system contractile sheath small subunitLG3211_RS11390Not AvailablePositive2807896 - 280840518853.6
type vi secretion system contractile sheath large subunitLG3211_RS11395Not AvailablePositive2808463 - 280994754708.8
type vi secretion system tube protein hcpLG3211_RS11400Not AvailablePositive2809988 - 281048217560.7
hypothetical proteinLG3211_RS11405Not AvailablePositive2810576 - 281107317375.8
hypothetical proteinLG3211_RS11410Not AvailablePositive2811310 - 281175916849.3
type vi secretion system baseplate subunit tsseLG3211_RS11415Not AvailablePositive2811788 - 281221916755.0

Displaying genes 2401 – 2410 of 5042 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.