Lysobacter capsici strain 55

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain 55 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for its presence in chromium-contaminated environments, specifically found in chromium-contaminated water and water associated with Cr-contaminated plants. Additionally, it has been isolated from the leaves of ready-to-eat lettuce plants, indicating its potential interaction with agricultural crops. The genomic analysis of Lysobacter capsici strain 55 reveals that it contains a single replicon, which may have implications for its genetic stability and adaptability in contaminated environments. The strain is cataloged under the accession number NZ_CP011130.1, facilitating further research and identification. The ecological significance of Lysobacter capsici strain 55 lies in its ability to thrive in chromium-polluted habitats. Its presence in agricultural settings, particularly on lettuce, suggests that it may play a role in the rhizosphere or phyllosphere dynamics, potentially influencing plant health and soil microbiome interactions. The bacterium's adaptation to chromium-contaminated environments highlights its potential utility in bioremediation efforts, where it could be leveraged to mitigate the effects of heavy metal contamination in agricultural lands. Understanding its mechanisms of survival and interaction with plants could provide insights into sustainable agricultural practices and the management of contaminated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
Strainstrain 55

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici strain 55
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain 55 chromosome, complete genome.

Gene Summary

Adenine Count

1065478 bp

Thymine Count

1068386 bp

Guanine Count

2130390 bp

Cytosine Count

2127635 bp

Genome Length

6391889 bp

Protein-coding Genes

5219 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseLC55x_RS19010Not AvailableNegative4738866 - 473984334715.7
udp-n-acetylmuramate--l-alanine ligaseLC55x_RS19015Not AvailableNegative4739840 - 474128550594.5
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseLC55x_RS19020Not AvailableNegative4741461 - 474255237888.0
putative lipid ii flippase ftswLC55x_RS19025Not AvailableNegative4742549 - 474387147127.5
phospho-n-acetylmuramoyl-pentapeptide- transferaseLC55x_RS19030Not AvailableNegative4743871 - 474495939432.6
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseLC55x_RS19035Not AvailableNegative4744949 - 474634348160.6
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseLC55x_RS19040Not AvailableNegative4746340 - 474780050882.0
penicillin-binding protein 2LC55x_RS19045Not AvailableNegative4747809 - 474979471196.7
cell division protein ftslLC55x_RS19050Not AvailableNegative4749791 - 475005410136.5
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhLC55x_RS19055Not AvailableNegative4750051 - 475109437516.7

Displaying genes 3931 – 3940 of 5308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.