Lysobacter capsici strain 55

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain 55 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for its presence in chromium-contaminated environments, specifically found in chromium-contaminated water and water associated with Cr-contaminated plants. Additionally, it has been isolated from the leaves of ready-to-eat lettuce plants, indicating its potential interaction with agricultural crops. The genomic analysis of Lysobacter capsici strain 55 reveals that it contains a single replicon, which may have implications for its genetic stability and adaptability in contaminated environments. The strain is cataloged under the accession number NZ_CP011130.1, facilitating further research and identification. The ecological significance of Lysobacter capsici strain 55 lies in its ability to thrive in chromium-polluted habitats. Its presence in agricultural settings, particularly on lettuce, suggests that it may play a role in the rhizosphere or phyllosphere dynamics, potentially influencing plant health and soil microbiome interactions. The bacterium's adaptation to chromium-contaminated environments highlights its potential utility in bioremediation efforts, where it could be leveraged to mitigate the effects of heavy metal contamination in agricultural lands. Understanding its mechanisms of survival and interaction with plants could provide insights into sustainable agricultural practices and the management of contaminated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
Strainstrain 55

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici strain 55
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain 55 chromosome, complete genome.

Gene Summary

Adenine Count

1065478 bp

Thymine Count

1068386 bp

Guanine Count

2130390 bp

Cytosine Count

2127635 bp

Genome Length

6391889 bp

Protein-coding Genes

5219 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad+ synthaseLC55x_RS18910Not AvailableNegative4713679 - 471533460236.2
endonuclease domain-containing proteinLC55x_RS18915Not AvailableNegative4715354 - 471571014005.9
succinate--coa ligase subunit alphaLC55x_RS18920Not AvailableNegative4716014 - 471688929821.0
adp-forming succinate--coa ligase subunit betaLC55x_RS18925Not AvailableNegative4716902 - 471806841247.8
pas domain-containing sensor histidine kinaseLC55x_RS18930Not AvailablePositive4718389 - 472001458974.8
sigma-54 dependent transcriptional regulatorLC55x_RS18935Not AvailablePositive4720100 - 472150950834.3
prepilin-type n-terminal cleavage/methylation domain-containing proteinLC55x_RS18940Not AvailablePositive4722060 - 472248514640.4
pilinLC55x_RS28400Not AvailablePositive4722646 - 472307114782.8
type iv-a pilus assembly atpase pilbLC55x_RS18950Not AvailablePositive4723256 - 472498362857.0
type ii secretion system f family proteinLC55x_RS18955Not AvailablePositive4724987 - 472625845854.0

Displaying genes 3911 – 3920 of 5308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.