Lysobacter capsici strain 55

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain 55 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for its presence in chromium-contaminated environments, specifically found in chromium-contaminated water and water associated with Cr-contaminated plants. Additionally, it has been isolated from the leaves of ready-to-eat lettuce plants, indicating its potential interaction with agricultural crops. The genomic analysis of Lysobacter capsici strain 55 reveals that it contains a single replicon, which may have implications for its genetic stability and adaptability in contaminated environments. The strain is cataloged under the accession number NZ_CP011130.1, facilitating further research and identification. The ecological significance of Lysobacter capsici strain 55 lies in its ability to thrive in chromium-polluted habitats. Its presence in agricultural settings, particularly on lettuce, suggests that it may play a role in the rhizosphere or phyllosphere dynamics, potentially influencing plant health and soil microbiome interactions. The bacterium's adaptation to chromium-contaminated environments highlights its potential utility in bioremediation efforts, where it could be leveraged to mitigate the effects of heavy metal contamination in agricultural lands. Understanding its mechanisms of survival and interaction with plants could provide insights into sustainable agricultural practices and the management of contaminated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
Strainstrain 55

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici strain 55
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain 55 chromosome, complete genome.

Gene Summary

Adenine Count

1065478 bp

Thymine Count

1068386 bp

Guanine Count

2130390 bp

Cytosine Count

2127635 bp

Genome Length

6391889 bp

Protein-coding Genes

5219 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr substrate-binding domain-containing proteinLC55x_RS18125Not AvailablePositive4513343 - 451429935591.5
dj-1/pfpi family proteinLC55x_RS18130Not AvailablePositive4514583 - 451515519781.7
peptide-methionine (s)-s-oxide reductase msraLC55x_RS18135Not AvailableNegative4515383 - 451603323732.9
peptide-n4-asparagine amidaseLC55x_RS18140Not AvailablePositive4516273 - 451792259970.3
dmt family transporterLC55x_RS18145Not AvailableNegative4518718 - 451965333234.8
duf2007 domain-containing proteinLC55x_RS18150Not AvailableNegative4519903 - 45201849720.72
glutamine--trna ligase/yqey domain fusion proteinLC55x_RS18155Not AvailablePositive4520400 - 452214865556.1
nucleoside deaminaseLC55x_RS18160Not AvailablePositive4522166 - 452272019808.8
23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmmLC55x_RS18165Not AvailablePositive4522858 - 452392840139.2
hypothetical proteinLC55x_RS18170Not AvailablePositive4524129 - 452487525412.2

Displaying genes 3751 – 3760 of 5308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.