Lysobacter capsici strain 55

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain 55 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for its presence in chromium-contaminated environments, specifically found in chromium-contaminated water and water associated with Cr-contaminated plants. Additionally, it has been isolated from the leaves of ready-to-eat lettuce plants, indicating its potential interaction with agricultural crops. The genomic analysis of Lysobacter capsici strain 55 reveals that it contains a single replicon, which may have implications for its genetic stability and adaptability in contaminated environments. The strain is cataloged under the accession number NZ_CP011130.1, facilitating further research and identification. The ecological significance of Lysobacter capsici strain 55 lies in its ability to thrive in chromium-polluted habitats. Its presence in agricultural settings, particularly on lettuce, suggests that it may play a role in the rhizosphere or phyllosphere dynamics, potentially influencing plant health and soil microbiome interactions. The bacterium's adaptation to chromium-contaminated environments highlights its potential utility in bioremediation efforts, where it could be leveraged to mitigate the effects of heavy metal contamination in agricultural lands. Understanding its mechanisms of survival and interaction with plants could provide insights into sustainable agricultural practices and the management of contaminated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
Strainstrain 55

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici strain 55
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain 55


Gene Summary

Adenine Count

1065478 bp

Thymine Count

1068386 bp

Guanine Count

2130390 bp

Cytosine Count

2127635 bp

Genome Length

6391889 bp

Protein-coding Genes

5219 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system export apparatus subunit sctuLC55x_RS00940Not AvailablePositive233128 - 23422841004.3
type iii secretion system export apparatus subunit scttLC55x_RS00945Not AvailableNegative234537 - 23532228547.0
type iii secretion system export apparatus subunit sctsLC55x_RS00950Not AvailableNegative235357 - 2356239568.02
escr/yscr/hrcr family type iii secretion system export apparatus proteinLC55x_RS28545Not AvailableNegative235745 - 23667131405.9
type iii secretion system cytoplasmic ring protein sctqLC55x_RS00965Not AvailableNegative236675 - 23777539912.0
response regulator transcription factorLC55x_RS28550Not AvailableNegative237768 - 23837021783.3
sensor histidine kinaseLC55x_RS00975Not AvailableNegative238731 - 23982539831.8
flagellar biosynthetic protein flioLC55x_RS00980Not AvailablePositive239994 - 24045515628.6
fhipep family type iii secretion proteinLC55x_RS00985Not AvailablePositive240876 - 24293974289.7
fha domain-containing proteinLC55x_RS00990Not AvailablePositive243065 - 24452850059.6

Displaying genes 231 – 240 of 5308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.