Lysobacter capsici strain 55

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain 55 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for its presence in chromium-contaminated environments, specifically found in chromium-contaminated water and water associated with Cr-contaminated plants. Additionally, it has been isolated from the leaves of ready-to-eat lettuce plants, indicating its potential interaction with agricultural crops. The genomic analysis of Lysobacter capsici strain 55 reveals that it contains a single replicon, which may have implications for its genetic stability and adaptability in contaminated environments. The strain is cataloged under the accession number NZ_CP011130.1, facilitating further research and identification. The ecological significance of Lysobacter capsici strain 55 lies in its ability to thrive in chromium-polluted habitats. Its presence in agricultural settings, particularly on lettuce, suggests that it may play a role in the rhizosphere or phyllosphere dynamics, potentially influencing plant health and soil microbiome interactions. The bacterium's adaptation to chromium-contaminated environments highlights its potential utility in bioremediation efforts, where it could be leveraged to mitigate the effects of heavy metal contamination in agricultural lands. Understanding its mechanisms of survival and interaction with plants could provide insights into sustainable agricultural practices and the management of contaminated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
Strainstrain 55

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici strain 55
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain 55


Gene Summary

Adenine Count

1065478 bp

Thymine Count

1068386 bp

Guanine Count

2130390 bp

Cytosine Count

2127635 bp

Genome Length

6391889 bp

Protein-coding Genes

5219 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
kpsf/gutq family sugar-phosphate isomeraseLC55x_RS05905Not AvailableNegative1509793 - 151080635228.6
bola family proteinLC55x_RS05910Not AvailablePositive1511041 - 15112808537.23
udp-n-acetylglucosamine 1-carboxyvinyltransferaseLC55x_RS05915Not AvailablePositive1511401 - 151265743930.2
duf3108 domain-containing proteinLC55x_RS05920Not AvailableNegative1512957 - 151366425146.1
duf3108 domain-containing proteinLC55x_RS05925Not AvailableNegative1513661 - 151438026444.7
phosphoribosylglycinamide formyltransferaseLC55x_RS05930Not AvailableNegative1514472 - 151515523970.9
tonb-dependent receptorLC55x_RS05935Not AvailableNegative1515362 - 151768085162.0
alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphataseLC55x_RS05940Not AvailableNegative1517997 - 151913340563.5
phosphonate metabolism transcriptional regulator phnfLC55x_RS05945Not AvailablePositive1519256 - 152012231732.8
hemopexin repeat-containing proteinLC55x_RS05950Not AvailablePositive1520221 - 152224572528.9

Displaying genes 1251 – 1260 of 5308 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.