Pseudomonas chlororaphis strain PCL1606

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain features two replicons in its genome, which may contribute to its adaptability and functionality in different environments. P. chlororaphis PCL1606 is associated with the plant kingdom, particularly with hosts in the Viridiplantae clade, including the cultivated species Brassica napus var. napus. Its presence in the rhizosphere suggests that it may play a role in plant growth promotion or soil health, though specific functions in these processes are not detailed. Interestingly, this strain exhibits pathogenicity towards animal hosts, indicating that it may have a broader ecological impact beyond its interactions with plants. The dual-host nature of P. chlororaphis PCL1606 highlights its potential versatility and adaptability in various ecological niches. The accession numbers NZ_CP011110.1 and NZ_CP011111.1 provide genomic resources for further exploration of this strain's characteristics and potential applications. Understanding the ecological roles and interactions of P. chlororaphis PCL1606 can provide insights into its function in both plant and animal health, emphasizing the complex relationships within microbial communities and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1606

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1606
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1606 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5827 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome silencing factorPCL1606_RS03980Not AvailablePositive837844 - 83826615756.8
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhPCL1606_RS03985Not AvailablePositive838276 - 83874317738.6
penicillin-binding protein 2PCL1606_RS03990Not AvailablePositive838760 - 84065570346.5
rod shape-determining protein rodaPCL1606_RS03995Not AvailablePositive840687 - 84179040065.8
lytic murein transglycosylase bPCL1606_RS04000Not AvailablePositive841808 - 84282137827.9
septal ring lytic transglycosylase rlpa family proteinPCL1606_RS04005Not AvailablePositive842821 - 84382535914.0
d-alanyl-d-alanine carboxypeptidase family proteinPCL1606_RS04010Not AvailablePositive844010 - 84516742101.7
duf493 domain-containing proteinPCL1606_RS04015Not AvailablePositive845248 - 84552310126.2
lipoyl(octanoyl) transferase lipbPCL1606_RS04020Not AvailablePositive845523 - 84617023567.4
lipoyl synthasePCL1606_RS04025Not AvailablePositive846172 - 84719438122.2

Displaying genes 971 – 980 of 6092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.