Pseudomonas chlororaphis strain PCL1606

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain features two replicons in its genome, which may contribute to its adaptability and functionality in different environments. P. chlororaphis PCL1606 is associated with the plant kingdom, particularly with hosts in the Viridiplantae clade, including the cultivated species Brassica napus var. napus. Its presence in the rhizosphere suggests that it may play a role in plant growth promotion or soil health, though specific functions in these processes are not detailed. Interestingly, this strain exhibits pathogenicity towards animal hosts, indicating that it may have a broader ecological impact beyond its interactions with plants. The dual-host nature of P. chlororaphis PCL1606 highlights its potential versatility and adaptability in various ecological niches. The accession numbers NZ_CP011110.1 and NZ_CP011111.1 provide genomic resources for further exploration of this strain's characteristics and potential applications. Understanding the ecological roles and interactions of P. chlororaphis PCL1606 can provide insights into its function in both plant and animal health, emphasizing the complex relationships within microbial communities and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1606

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1606
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1606 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5827 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate--coa ligase subunit alphaPCL1606_RS21365Not AvailableNegative4780942 - 478182329924.4
adp-forming succinate--coa ligase subunit betaPCL1606_RS21370Not AvailableNegative4781823 - 478298941311.9
dihydrolipoyl dehydrogenasePCL1606_RS21375Not AvailableNegative4783213 - 478464949858.4
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferasePCL1606_RS21380Not AvailableNegative4784762 - 478599742708.6
2-oxoglutarate dehydrogenase e1 componentPCL1606_RS21385Not AvailableNegative4786040 - 4788871106660.0
succinate dehydrogenase iron-sulfur subunitPCL1606_RS21390Not AvailableNegative4789146 - 478985026035.5
succinate dehydrogenase flavoprotein subunitPCL1606_RS21395Not AvailableNegative4789863 - 479163563501.5
succinate dehydrogenase, hydrophobic membrane anchor proteinPCL1606_RS21400Not AvailableNegative4791639 - 479200713623.9
succinate dehydrogenase, cytochrome b556 subunitPCL1606_RS21405Not AvailableNegative4792001 - 479238713827.6
citrate synthasePCL1606_RS21410Not AvailablePositive4792739 - 479402847760.8

Displaying genes 4431 – 4440 of 6092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.