Pseudomonas chlororaphis strain PCL1606

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain features two replicons in its genome, which may contribute to its adaptability and functionality in different environments. P. chlororaphis PCL1606 is associated with the plant kingdom, particularly with hosts in the Viridiplantae clade, including the cultivated species Brassica napus var. napus. Its presence in the rhizosphere suggests that it may play a role in plant growth promotion or soil health, though specific functions in these processes are not detailed. Interestingly, this strain exhibits pathogenicity towards animal hosts, indicating that it may have a broader ecological impact beyond its interactions with plants. The dual-host nature of P. chlororaphis PCL1606 highlights its potential versatility and adaptability in various ecological niches. The accession numbers NZ_CP011110.1 and NZ_CP011111.1 provide genomic resources for further exploration of this strain's characteristics and potential applications. Understanding the ecological roles and interactions of P. chlororaphis PCL1606 can provide insights into its function in both plant and animal health, emphasizing the complex relationships within microbial communities and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1606

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1606
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1606 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5827 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-dependent oxidoreductasePCL1606_RS20150Not AvailableNegative4527525 - 452855936762.8
ybab/ebfc family nucleoid-associated proteinPCL1606_RS20155Not AvailableNegative4528735 - 452907312073.8
dna polymerase iii subunit gamma/tauPCL1606_RS20160Not AvailableNegative4529140 - 453123375323.8
substrate-binding periplasmic proteinPCL1606_RS20165Not AvailablePositive4531371 - 453213828845.8
putative bifunctional diguanylate cyclase/phosphodiesterasePCL1606_RS20170Not AvailableNegative4532142 - 453384263608.5
helix-turn-helix domain-containing proteinPCL1606_RS20175Not AvailablePositive4534436 - 453475011316.8
voc family proteinPCL1606_RS20180Not AvailablePositive4534892 - 453526613274.6
dmt family transporterPCL1606_RS20185Not AvailableNegative4535200 - 453618335064.9
lysr family transcriptional regulatorPCL1606_RS20190Not AvailablePositive4536284 - 453715932274.9
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive4537244 - 4537340Not Available

Displaying genes 4231 – 4240 of 6092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.