Pseudomonas chlororaphis strain PCL1606

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain features two replicons in its genome, which may contribute to its adaptability and functionality in different environments. P. chlororaphis PCL1606 is associated with the plant kingdom, particularly with hosts in the Viridiplantae clade, including the cultivated species Brassica napus var. napus. Its presence in the rhizosphere suggests that it may play a role in plant growth promotion or soil health, though specific functions in these processes are not detailed. Interestingly, this strain exhibits pathogenicity towards animal hosts, indicating that it may have a broader ecological impact beyond its interactions with plants. The dual-host nature of P. chlororaphis PCL1606 highlights its potential versatility and adaptability in various ecological niches. The accession numbers NZ_CP011110.1 and NZ_CP011111.1 provide genomic resources for further exploration of this strain's characteristics and potential applications. Understanding the ecological roles and interactions of P. chlororaphis PCL1606 can provide insights into its function in both plant and animal health, emphasizing the complex relationships within microbial communities and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1606

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1606
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1606 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5827 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPCL1606_RS17550Not AvailableNegative3957518 - 39576976521.24
gfo/idh/moca family oxidoreductasePCL1606_RS17555Not AvailableNegative3957851 - 395889737549.6
gfo/idh/moca family proteinPCL1606_RS17560Not AvailableNegative3959051 - 396006136473.9
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)PCL1606_RS17565Not AvailableNegative3960124 - 396205869385.9
tim barrel proteinPCL1606_RS17570Not AvailableNegative3962196 - 396301730042.3
coa-acylating methylmalonate-semialdehyde dehydrogenasePCL1606_RS17575Not AvailableNegative3963051 - 396455053498.3
5-deoxy-glucuronate isomerasePCL1606_RS17580Not AvailableNegative3964581 - 396539029569.1
myo-inosose-2 dehydratasePCL1606_RS17585Not AvailableNegative3965387 - 396628032535.7
bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2- deoxyphosphogluconate aldolasePCL1606_RS17590Not AvailableNegative3966532 - 396846971164.4
hypothetical proteinPCL1606_RS30930Not AvailablePositive3968468 - 39687048644.03

Displaying genes 3741 – 3750 of 6092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.