Pseudomonas chlororaphis strain PCL1606

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain features two replicons in its genome, which may contribute to its adaptability and functionality in different environments. P. chlororaphis PCL1606 is associated with the plant kingdom, particularly with hosts in the Viridiplantae clade, including the cultivated species Brassica napus var. napus. Its presence in the rhizosphere suggests that it may play a role in plant growth promotion or soil health, though specific functions in these processes are not detailed. Interestingly, this strain exhibits pathogenicity towards animal hosts, indicating that it may have a broader ecological impact beyond its interactions with plants. The dual-host nature of P. chlororaphis PCL1606 highlights its potential versatility and adaptability in various ecological niches. The accession numbers NZ_CP011110.1 and NZ_CP011111.1 provide genomic resources for further exploration of this strain's characteristics and potential applications. Understanding the ecological roles and interactions of P. chlororaphis PCL1606 can provide insights into its function in both plant and animal health, emphasizing the complex relationships within microbial communities and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1606

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1606
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1606 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5827 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsq/divibPCL1606_RS05930Not AvailablePositive1250026 - 125089232381.4
cell division protein ftsaPCL1606_RS05935Not AvailablePositive1250907 - 125216644722.9
cell division protein ftszPCL1606_RS05940Not AvailablePositive1252232 - 125342241452.1
udp-3-o-acyl-n-acetylglucosamine deacetylasePCL1606_RS05945Not AvailablePositive1253535 - 125444633238.6
sensor domain-containing diguanylate cyclasePCL1606_RS05950Not AvailableNegative1254547 - 125604054726.5
oprd family porinPCL1606_RS05955Not AvailableNegative1256189 - 125746946624.6
hypothetical proteinPCL1606_RS05960Not AvailableNegative1257699 - 12579207841.19
heavy metal sensor histidine kinasePCL1606_RS05965Not AvailableNegative1258212 - 125957650348.9
heavy metal response regulator transcription factorPCL1606_RS05970Not AvailableNegative1259566 - 126024325124.6
multidrug efflux rnd transporter permease subunitPCL1606_RS05975Not AvailableNegative1260253 - 1263348110080.0

Displaying genes 1371 – 1380 of 6092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.