Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | VO01_RS04200 | Not Available | Negative | 865324 - 866856 | 54575.5 |
| hypothetical protein | VO01_RS04205 | Not Available | Positive | 866953 - 867519 | 18953.2 |
| mfs transporter | VO01_RS04210 | Not Available | Negative | 867547 - 868875 | 47406.6 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS04215 | Not Available | Negative | 868872 - 869294 | 15180.2 |
| hypothetical protein | VO01_RS17455 | Not Available | Positive | 869477 - 869653 | 5761.06 |
| alpha/beta fold hydrolase | VO01_RS04220 | Not Available | Positive | 869760 - 870578 | 28442.8 |
| glycoside hydrolase family 15 protein | VO01_RS04225 | Not Available | Negative | 870655 - 872508 | 67913.6 |
| glucose-6-phosphate dehydrogenase | VO01_RS04230 | Not Available | Positive | 872565 - 873956 | 50087.3 |
| hypothetical protein | VO01_RS04235 | Not Available | Negative | 873979 - 874632 | 22279.1 |
| mechanosensitive ion channel family protein | VO01_RS04240 | Not Available | Positive | 874863 - 876092 | 44763.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
