Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cpae family protein | VO01_RS04150 | Not Available | Positive | 857850 - 859451 | 56350.5 |
| sensor histidine kinase | VO01_RS04155 | Not Available | Positive | 859461 - 860963 | 54152.3 |
| whib family transcriptional regulator | VO01_RS04160 | Not Available | Negative | 861057 - 861305 | 9003.68 |
| hypothetical protein | VO01_RS04165 | Not Available | Positive | 861550 - 861981 | 14814.5 |
| thioredoxin-dependent thiol peroxidase | VO01_RS04170 | Not Available | Negative | 862012 - 862491 | 17172.3 |
| Trna-lys | Not Available | Not Available | Positive | 862646 - 862721 | Not Available |
| card family transcriptional regulator | VO01_RS04180 | Not Available | Positive | 863002 - 863505 | 18188.6 |
| hypothetical protein | VO01_RS04185 | Not Available | Positive | 863631 - 863861 | 8104.0 |
| hnh endonuclease family protein | VO01_RS04190 | Not Available | Positive | 863997 - 864824 | 29441.6 |
| hypothetical protein | VO01_RS04195 | Not Available | Positive | 864849 - 865313 | 16144.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
